KEGG   Fragilariopsis cylindrus: FRACYDRAFT_170265
Entry
FRACYDRAFT_170265 CDS       T04784                                 
Name
(GenBank) class I RPD3 type histone deacetylase protein
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03082  ATP-dependent chromatin remodeling
fcy03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    FRACYDRAFT_170265
   03083 Polycomb repressive complex
    FRACYDRAFT_170265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:fcy03036]
    FRACYDRAFT_170265
Enzymes [BR:fcy01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     FRACYDRAFT_170265
Chromosome and associated proteins [BR:fcy03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     FRACYDRAFT_170265
   HDAC complexes
    Sin3A-HDAC complex
     FRACYDRAFT_170265
    BRAF-HDAC complex
     FRACYDRAFT_170265
    REST complex
     FRACYDRAFT_170265
    SHIP complex
     FRACYDRAFT_170265
    MiDAC complex
     FRACYDRAFT_170265
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     FRACYDRAFT_170265
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    FRACYDRAFT_170265
  Chromatin remodeling factors
   NuRD complex
    FRACYDRAFT_170265
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-ProteinID: OEU15542
JGI: 170265
UniProt: A0A1E7FBJ6
LinkDB
Position
Unknown
AA seq 413 aa
MTAENRRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRKMEVFRPRLVSPTA
MTRFHSDDYINFLKVITPDNMGDYVRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAAR
LNDNAVDIVINWAGGLHHAKKAEASGFCYVNDCVLAILELLKKHERVLYIDIDIHHGDGV
EEAFYSTNRVMTCSFHKFGEYFPGTGDVHDVGHADGKNYSINFPLNDGMDDKSYKSIFRP
VIGKIMEMFAPGAIVLQCGADSLSGDRLGCFNLSVKGHADCVRYVRSFGIPMLVLGGGGY
TLRNVPRCWTYETAVLTGEEVKDELPFNDYFEYFGPDYRLNLPVSNMENLNSPEYLEKTK
NQLLEILSDVEPVPSVQIQTGQVESQLNPRGMNLEVDGPTEDERKEHSSELVG
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgaccgccgagaacagaagagtttcgtatttttatgatgccgaggttggcaattaccat
tatggccaaggccatccaatgaaacctcatcgtgtccgtatgacccacaacttggttgtc
aactatggtctgtaccgaaagatggaggtatttcgtcctcgtttggtatctcctaccgca
atgacacgtttccacagtgatgattacatcaattttctgaaagttattactcctgacaac
atgggagattatgtccgacaactgcaaagatttaatgtcggagaggattgtcccgtcttt
gatggattatttgaattttgtcaactgtacacttccggatcgatcggtggagcggcgcgg
ttgaatgataacgcggtcgatatcgtcattaactgggcgggaggactacatcatgcaaag
aaagcagaagcatctggattttgttacgtcaatgattgtgttttagcaattcttgaactt
ctcaaaaaacacgaacgtgttctttacatcgatatcgacatccatcacggagatggtgtc
gaggaggcattttactcaacaaaccgtgtcatgacgtgttcatttcataaatttggtgaa
tacttccccggaactggagacgttcatgatgttggacatgcagatggaaagaactattcc
atcaactttcccttgaatgatggtatggacgataagtcgtataaaagtatcttccgtccc
gtgattggcaaaatcatggaaatgtttgctccgggagcaattgtcctccaatgtggtgca
gattcattgtcgggagatcgtcttgggtgtttcaatttatccgtgaagggccatgcagac
tgcgtccggtacgttcgcagctttggtataccgatgttggtattgggaggtgggggatat
actctccgcaatgtaccaaggtgttggacgtacgaaacagcagtgttgacgggggaagaa
gttaaggacgagctacccttcaacgattactttgagtactttgggccagactatcgtctc
aaccttcctgttagcaacatggaaaatctgaattcgcctgagtatcttgaaaagaccaag
aaccagcttttggaaattttgtccgatgttgaacctgttcctagtgtacagattcaaact
ggacaggtagaatcgcagctcaatcctcgtggaatgaacttggaagttgatggtcctacc
gaagatgaaaggaaagagcactcgtcagaactagtgggttag

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