KEGG   Fragilariopsis cylindrus: FRACYDRAFT_177662
Entry
FRACYDRAFT_177662 CDS       T04784                                 
Name
(GenBank) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03020  RNA polymerase
fcy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FRACYDRAFT_177662
  09124 Replication and repair
   03420 Nucleotide excision repair
    FRACYDRAFT_177662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fcy03021]
    FRACYDRAFT_177662
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_177662
Transcription machinery [BR:fcy03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     FRACYDRAFT_177662
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FRACYDRAFT_177662
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS
Other DBs
NCBI-ProteinID: OEU22598
JGI: 177662
UniProt: A0A1E7FWQ9
LinkDB
Position
Unknown
AA seq 111 aa
MRFCPHDSSMLYPQEDKRNRNLQYACRLCRYTELAPDQPLIYRFDLKKEVGNILHTVPSA
VSDDPTLARSQNANCTNCGHNEAVFFMSDTTQSDSLALIFVCCNCDHKWVN
NT seq 336 nt   +upstreamnt  +downstreamnt
atgagattctgtcctcacgattcatctatgttatatccgcaggaagataaacggaacaga
aacttacaatacgcatgtcgactatgtcgatatacagaacttgcaccagatcagcctctt
atttatcgattcgatttaaagaaggaggttggaaatatcttacatacagtaccaagtgca
gttagtgatgatccaaccctagcacgatcacagaatgcgaattgtacaaattgcggtcat
aatgaagctgtattctttatgagtgatacaacacaaagtgacagtcttgcacttatcttt
gtttgttgcaactgtgatcataaatgggtgaattaa

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