Fragilariopsis cylindrus: FRACYDRAFT_178393
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Entry
FRACYDRAFT_178393 CDS
T04784
Name
(GenBank) snare-like protein
KO
K08516
synaptobrevin homolog YKT6
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
FRACYDRAFT_178393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fcy04131
]
FRACYDRAFT_178393
Membrane trafficking [BR:
fcy04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Ykt6
FRACYDRAFT_178393
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Longin
Synaptobrevin
Herpes_teg_N
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
OEU22359
JGI:
178393
UniProt:
A0A1E7FW22
LinkDB
All DBs
Position
Unknown
AA seq
200 aa
AA seq
DB search
MKLLALSTVRTGNELPDPIIACFEAELSSFGFFQRPTIKEMLSFLTKTFMKRTEPGQRQS
ITHEGYVVHCYIRSDGLGGTVITDEEYPARVAFVLLSQILDEFTTSVGDTWKTCTVHESM
TFPALKEYLTKYQDPSAADKITKIQNDLDETTQILHKTIDSVLERGVKLDNLVERSNDLS
AQSKMFYKQAKKTNSCCVIS
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttcttgcgttgtcaactgtgcgaactggaaatgaacttcctgaccctataatc
gcttgcttcgaagcggagctttcctcattcggattctttcaaagaccgacgataaaggaa
atgttatcatttctaacaaaaactttcatgaagagaacagagccaggacaacgccaatct
attactcatgagggttatgtcgttcactgttacatccgatcggatggattaggaggaacg
gttattaccgatgaggaatatcccgctcgggttgcatttgtcttgttatcgcaaattttg
gatgaatttacgacctcagttggtgacacatggaagacatgtacggtccacgaatcaatg
acattccctgcattgaaggaatacctaaccaaatatcaagacccatcggcggctgataag
atcactaaaattcaaaatgacttggatgagacgacacaaattttgcataaaaccatcgat
agcgtcttagaacgtggtgtcaagctagacaacttagttgagcgctctaatgatctttcg
gcacaatccaaaatgttttacaaacaggcgaaaaagaccaatagctgttgtgtaattagt
taa
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