Fragilariopsis cylindrus: FRACYDRAFT_178799
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Entry
FRACYDRAFT_178799 CDS
T04784
Name
(GenBank) RNB-domain-containing protein
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_178799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_178799
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
FRACYDRAFT_178799
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
CSD2
Motif
Other DBs
NCBI-ProteinID:
OEU22755
JGI:
178799
UniProt:
A0A1E7FX94
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MTILEHAKILATRCEEDYNRRNDPAKKLKGHSLDSVTGGVEEYWTEDIIQEGLRNRTLVR
GKLTVTKDNIKEAIVSSGGGSDNSSSYFINQTKGYFNRALHQDIVIVMPLPRQEWTSPVG
RRRLVHVQPDDNDVTDNDDETSAPPIPSGRVVAIVSESRRQFVATMVDTPMNDESSCLVL
PMDMRIPKIRIRTNGWRRFVGQRLLVQVERWEVGSNYPSGFCVEILGPIAHIETEITCLL
KENQIDLDPFSAAAQACLPLEGNDWKIPSQEISQRKDLRSTHRIFSVDPNGCQDIDDTFH
ARVLPNGDIEVGVHIADVTYFLPHDSPLDKEAQRRATTFYLVDRRFDMLPSVLSGNLCSL
HGNMERLAVSTIWTMSSDFKVVKDFWYGRTVIRNCQAMTYDQAHNILHNLPPDDPSKPHP
PPLTAGYPVTRSNNESLKGDLSLLTKLARKLRKDREDIGGAVDLSSGDQGNELKFSLDGN
HQPVKVTPKKQLEIHQTVAELMIMANSWVARTIFETFPNSALLRIHQSVDESRFEDLKEI
LDAGKITFDGSSNMKLADSLKKAERSSKSNSAVNSLFQSLATRAMSEAQYVSTGDVGGEN
NLSHYGLGLGKYTHFTSPIRRYADVVVHRQLL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgacaattctcgaacatgccaagatacttgctactcgttgcgaagaagattacaataga
aggaacgatccagcaaaaaaattaaaaggccattcgttagattcggttacaggtggtgtg
gaagaatattggaccgaggatatcattcaagagggattacgtaacagaactctagtcagg
gggaaattgacagttacgaaagataatatcaaagaagcgattgtgtcaagtggtggaggt
agcgacaattcttcatcttatttcatcaatcagacaaaagggtacttcaaccgcgcgttg
caccaagatattgtcatcgttatgccgttgccacgacaagaatggacaagccccgtcgga
agacgccgattggtacatgttcagcctgatgacaacgacgtaaccgataatgatgatgag
acatctgcaccaccgattccatcaggaagagtagtagccattgtcagtgagtctcggcga
caattcgtcgccacaatggtcgatacaccgatgaacgacgaatcgtcgtgtttggtgttg
ccaatggacatgagaataccgaagatacgaatcagaacaaatggatggcgacggtttgta
ggtcaacgccttttggtccaagtggaaagatgggaagtcgggtcaaactacccctcggga
ttttgtgttgaaatcttgggaccaatcgctcacattgaaacagaaatcacatgtttgctc
aaagaaaatcaaatagatctggatccatttagtgcagctgctcaagcttgtttgccgctt
gaggggaatgattggaagattccttctcaagaaatttcacaacgaaaggacttaaggtcg
acacatcgcatttttagtgttgatcctaacgggtgtcaagacatcgacgatacgtttcat
gctcgtgtacttccaaatggagacatagaggttggagttcatattgccgatgtcacttac
tttctaccacatgattcaccgctagacaaggaagcgcaacgacgagcaactaccttttac
cttgttgatcgaagatttgacatgctaccgagtgttctgagtggtaacctatgtagtcta
catggaaatatggaacgcttggcggtttctaccatctggactatgtcaagcgatttcaaa
gttgtcaaagatttttggtatggaaggacagtcattcgaaattgtcaggccatgacctat
gatcaggcgcataacatccttcacaatttaccacctgacgacccttcaaagccacaccct
cctccattgacggctgggtatccggtgactcgttccaacaacgaatctttaaaaggagac
ttatcgctactaaccaaactggcaagaaaacttagaaaagatcgagaagatataggtggc
gcggtagatttatcgagtggtgatcaaggcaatgagctcaaattttcgttggatggaaat
catcaaccagttaaagttacccccaagaagcagcttgaaattcaccaaacagtagcagag
ctaatgattatggcgaatagttgggtggcaagaacgatattcgaaacattccctaacagt
gccttgcttcgcatccatcaaagtgttgatgaaagtcggtttgaagatctcaaagaaatt
ttagatgcaggcaagataacttttgatggtagtagcaatatgaaacttgcggactcgctt
aaaaaggccgaaagatcgtctaagtctaattctgctgttaactcgttgtttcaatctcta
gcaactagagctatgtcagaagcacaatatgtctcaacaggtgatgtagggggcgaaaac
aacttatcgcattacggacttggtcttggtaaatacactcacttcacatctcctatccga
aggtacgccgatgttgttgttcatcggcaactcctt
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