Fragilariopsis cylindrus: FRACYDRAFT_178949
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Entry
FRACYDRAFT_178949 CDS
T04784
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K14572
midasin
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FRACYDRAFT_178949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fcy03009
]
FRACYDRAFT_178949
Ribosome biogenesis [BR:
fcy03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
FRACYDRAFT_178949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_5
AAA_lid_7
AAA_7
AAA
AAA_16
AAA_22
AAA_3
AAA_18
AAA_lid_5
ABC_tran
bpMoxR
TsaE
Sigma54_activat
AAA_30
AAA_28
nSTAND3
AAA_19
Dynein_heavy
AAA_25
AAA_29
AAA_33
AAA_14
RNA_helicase
NACHT
Sigma54_activ_2
AAA_23
ATPase_2
Zeta_toxin
RsgA_GTPase
Rad17
Viral_helicase1
SRP54
ORC-CDC6-like
MDN1_4th
PduV-EutP
ResIII
T2SSE
TniB
AAA_15
IstB_IS21
G-alpha
dNK
Motif
Other DBs
NCBI-ProteinID:
OEU22782
JGI:
178949
UniProt:
A0A1E7FX93
LinkDB
All DBs
Position
Unknown
AA seq
1953 aa
AA seq
DB search
MCHYPQPPPILVCGPHGSGKSSLIRELLRLCGPKESLIEFHIDEETDSKNLIGSYTTTDV
PGEFSWRAGALTNASREGRWVLIEDLDCVPVEIQAALAKLFEERMIPLGNGKYERCHPNF
RIFATCTTNASIGGRDRHSLRIGNHRGGGKQILNPSYWRNVHVKPMPYSELKEVAVSLYP
DVPISVVESAMTLLQALDRSGREHTVNEKDDNSEGDNANDVEKNAARVTKIWTGGRIPSV
RDLFKLLSRISNGMCFEKNTLYITEAQRTLCMAESVDIFMASCPNQQVREEFIGLVAAPV
WGITGDLAFAYIMVRKPTVLMGTNFFEIGRAKFDITKSIGYSEEPSTTFAQTSHALRLME
SIAVCVRENEPILLVGETGCGKTTVIQQLAASCERTLIVQNLSLQTDSTDLLGGYRPLEI
QNVARNVYKDFVDTFVSSFSRKQNLKFLQYASSMLEKSNWKKLSQSFKKAAQLGLQKMKE
RQENQDILLSDSMVETWQNFAKKAERFERQRVSCDAGLAFEFAEGALVDAIQTGKWVLLD
ELNLASSDTLQRLCGLLDEPTGSLTLTERGDDTAIRRHPNFRLFAAMNPATDAGKKDLPS
SIRCRFSELYVDELLDPIELRLVAARYLDGVLPINGNSPEHTDIVICAVDQYLRCRELAE
TTLSDGNGHKPRYTLRTMSRALNAARTLVLQQRIPLRRAIFEGFQLSFEGILDTGSIKAI
RKILTKAFLKEEAKKIDLDHPGRRPGGKDSQNDYVIIKPFWIKAGPLEIVDWSETGANGK
SKFILTPTASTNLRRLARALATGPWPILLEGPTSSGKTTLVEYIAARCGHHVVRINNHEH
TDVQEYTGSFAADQNGSLSFRDGILVLEALNRLLDDNRELYLAETNETVKPHPSFRLFAT
QNPSGAYGGRKPLSRAFRNRFVELHVGDIPCDEMSMILEKRCGCPPSHAKLLVKIMIDLR
HKRSKSNIFLGKDSFITPRDLLRWAERQSGSKHDLAEHGYMILAERLRSEEEKKMVRDVL
EEHTKVKIDLERLYYGENSEAKQLLDKSLPAAQLQSNHLIASIAPTRSMLRLIHLVLNCV
RQREPVLLVGDTGCGKTTVIQLLSFVLNQTLYAVNCHATTETSDLIGGLRPLGRRFRALF
EWSDGPLVKAMKSGELLLLDEMSLAEDAVLERLNSVLEPSRSLVLAEKGDDGSSTIGKDN
RIIVAHDQFRIFATMNPGGDFGKRELSPALRSRFTEIWVPSITERSDFEVVLGRSLAPSI
SQQINTQQSSIIGCILDYVEWFNSDVCGVPASPFAGYSLSLRDILSWAHFIVEARKSNAN
LAMWDALYHGACLMHLDGLGLGTGLASDASTTLKLKAEQYLLSLVPDGSISNVRSVDDSF
CIQNGQFGVFPYFVNVGKSIIPDSTFNMTAPTTSLNAFRVLRAMQLKKPILLEGSPGVGK
TSLISALASASGNKLVRINLSEQTDVSDLMGSDIPVENSTNSGPSFEWCDGVLLTAIKEG
SWVLLDELNLASQAVLEGLNSCLDHRATMYIPELGESFVCPPTFRVFGAQNPLGQGGGRK
GLPKSFLNRFTKVFIDALTDSDLRSIVSSRFHSFSADFVNQIIDFNNDIHNEVIELREYG
SDGGPWEFNLRDVFRWCELIESGRSSHIAGARDLYYQRFRTQRDRDKVDKTFQKHFGSSL
VPECPPKFKVLDDTIQIGETLLSRLDHLGETLQTSRTTIRESDLLFSRLMQMEAVARCIN
LKWPCLLVGGTGTGKTTMISNLAGLCNATLVEHCLSPSSDVSELVGGFEQREALSREIQV
IKDLCMLANKILMADAFQSRKSKWCWDTRVNIIDETVQAQTHEQKSVHKQQDSGHFVWRD
GILVEALLKGYWLLLENVNLCPSSVLDRLNSVTERDGFLLLSESGTQDGDNTNHTHRIIK
PHKNFRIFFTMNATNGEISRAMRNRCVEISLLD
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atgtgccattatccgcagcccccgccaattttggtttgtggtccacatggctccggcaaa
tcaagcttaattcgtgagcttttacgattatgtggaccgaaagaatcgctcattgagttt
catattgacgaggaaacagattcgaagaacctgattggatcttatacgacaactgatgtt
cctggtgaattttcctggcgggctggggcattaaccaatgcctctcgggagggacgatgg
gtacttattgaagatcttgactgtgtccctgtggagatccaggctgcccttgcaaaactt
tttgaagaaaggatgataccactcggtaacggaaagtatgaacgttgtcatcctaacttc
aggatctttgctacatgcactaccaatgcatcaattggaggacgagatagacacagcctt
cgtattgggaaccatagaggtggagggaaacagattttgaatccttcctactggagaaat
gtccatgtcaagcctatgccatattcagagctgaaagaggttgcagtgtcactttatccc
gacgtaccgatatccgtggttgaatcggccatgactcttttgcaagctcttgatcgaagt
gggcgtgagcataccgtgaatgaaaaagatgataattctgagggagataatgccaatgac
gtcgaaaaaaatgcagcaagagtgaccaagatctggactggtgggagaataccgtctgtt
cgggatctattcaaacttttatcaagaatatccaacgggatgtgtttcgagaagaataca
ctttacatcacagaggcccaacgaacactgtgtatggcagaaagtgtagatatcttcatg
gcgtcgtgcccgaatcagcaagttagagaagaatttattggtttggttgccgcgcctgta
tgggggataactggagatcttgcattcgcgtatattatggttagaaaaccaacggtgctt
atgggcacaaatttttttgaaattgggcgtgctaagtttgatataacaaaatccattgga
tactccgaagagccttccacgacctttgctcaaacaagtcatgccttgagactcatggag
tcaatagcagtttgtgtcagggaaaatgaaccaatccttcttgtgggcgagacaggttgt
gggaaaacaacagtcatacaacaacttgccgcatcttgtgagaggacgctaattgtccaa
aatctatcgctacaaacagattcaacagacctgttgggaggttatcgaccccttgagatc
cagaacgttgccagaaatgtttacaaggacttcgtcgacactttcgtatcaagtttttcg
cggaaacagaacctaaaattccttcagtacgcatcttcaatgcttgagaagtcaaattgg
aagaaactttctcaatctttcaaaaaggcggcacaacttggattgcaaaagatgaaagaa
cgtcaagaaaaccaggatatccttttgtcagattccatggtagaaacttggcaaaatttt
gcgaagaaagcagaacgattcgaacgtcagagagtatcctgtgatgctggtcttgctttc
gagtttgcagaaggtgcattagtggatgctattcaaactggaaaatgggttctactcgat
gagttaaatcttgcttcctctgacacgctacaacggctgtgtggtctgttagatgagcca
actggtagtcttacgttaacagaacgaggagatgacactgctatcagacgacacccaaac
ttccgactattcgcagcgatgaatccagcaactgatgctggcaagaaagacctcccatca
agtatccgttgtcgattttcagagctttatgttgacgaattactcgatcctattgagtta
agactggttgcagcgcgataccttgatggggttctacctatcaatgggaattcccccgaa
cacacagacatcgtcatatgtgctgtagaccagtacctacggtgtcgagaacttgcggag
actacgctttcggacggaaacggtcataaaccgagatacacattgagaacaatgtcgcgc
gctctcaatgcagctagaaccctggttttacagcaacgcattcctttacgaagggccatt
tttgaaggctttcagctttcttttgaaggaattcttgataccggctcgataaaagctata
agaaaaatattgacaaaggcttttttgaaagaagaggcaaagaaaatcgacttggaccat
ccgggtaggagacctggaggaaaggatagtcaaaatgactacgtaattattaaaccattt
tggatcaaagctggaccattggagatagttgactggtccgagactggagcaaatgggaaa
tcaaagttcattcttacacccacagcttcaacgaacctacggaggctagcccgtgctcta
gcaactggaccgtggccaatattactagaaggaccgacatcgagtggaaagacgacgctt
gttgagtacatagcagcgagatgcgggcaccatgttgtaagaatcaacaatcatgagcac
actgacgttcaggaatacactggatcatttgctgctgatcagaatggatcattatcattt
cgagacggcattcttgtgctagaagctctgaatcggcttttggatgacaatagagaacta
tatttggctgaaacaaacgagactgtgaaaccccatcccagttttcgactgtttgcgaca
cagaatccttcgggcgcatacggaggtagaaaacctctgtcaagagcatttcgcaatcgc
tttgttgagcttcatgttggtgacatcccctgtgatgaaatgtctatgattttggagaag
aggtgcggttgtcctccttcgcacgccaaacttctggtgaaaattatgattgatcttagg
cacaaaagaagtaaaagcaacattttccttggaaaggatagctttataacaccgagagat
ttgctcagatgggctgagcgccaaagtggatcaaaacatgatttggctgagcatgggtat
atgatcttagcagagcgacttcggtcggaagaagagaaaaaaatggtccgtgacgtcctt
gaggaacacactaaggtaaaaatcgatttggaacgactctactatggtgaaaattcagaa
gcgaaacagcttcttgataagtctctaccagcggcccagcttcaaagcaaccatcttatt
gcatctattgcaccaacaagatcgatgttgcgactaatacatttggtgttgaattgcgtg
cgacagagagagccagttctcttagttggagacactggttgtgggaagactactgtcatc
cagctgctgagttttgtgttgaatcagacgctttatgctgtaaattgtcatgcgacaaca
gagacttctgatctgattggagggcttcgcccccttggacggcgcttcagagccctattt
gaatggtctgatggtccgcttgtcaaagccatgaagtcaggggaattgctgcttttggat
gaaatgagtcttgccgaggatgctgtcctggaacgactaaattctgtactagaaccatca
agatcacttgtccttgcagaaaagggtgacgatggctcgtcaaccataggaaaggacaat
cgcatcattgtagctcatgatcagtttcgaatctttgccacaatgaacccaggaggagac
ttcggcaaaagagaattaagtccagctttacgcagtcgctttacagaaatatgggttcca
tctatcacagaaaggagcgatttcgaggtagtcctaggacgatcgttggcgcccagcata
agtcagcaaatcaatacacaacaatcatcgattataggctgcattcttgactatgtcgaa
tggtttaattcggatgtctgtggtgtacctgcgagtccatttgctggttactctttgtct
ttgcgagatattctttcttgggctcactttatcgtggaggcaagaaagtcaaatgcgaac
ctcgcaatgtgggatgcactataccacggtgcatgcctcatgcatttagatggtctagga
ctaggcacgggtctagcttctgatgcctcgaccaccctcaagttgaaagccgagcaatat
cttttgagtctcgtaccagatgggagtatctcaaatgtgcgcagcgtagacgattctttt
tgcatccagaatgggcagtttggcgtgttcccatatttcgttaacgttggaaagtctatc
attccagattcaactttcaatatgacagctccgacaacatctctgaatgcatttcgtgtt
ttgcgggcaatgcaattaaagaaaccaatacttttagaaggatcgcctggggttggcaag
acgtctttaatcagcgctcttgcatccgcatctgggaacaaacttgtccggatcaatctt
tccgaacaaactgacgtatctgatttgatgggtagtgatatcccggttgaaaattccaca
aatagtggaccttcgtttgaatggtgtgatggagttttattaacagctatcaaagagggc
agctgggtcctccttgatgagctcaatttagcatcacaagctgtactcgaaggactcaat
agctgtctggaccatcgcgcaactatgtatatcccagagcttggcgaatcttttgtctgt
cctccaactttccgtgtgtttggggctcaaaatccattaggccaaggaggaggtcgaaag
ggccttccgaagtcctttctcaacagatttacaaaagtgttcattgatgctcttactgat
tcagatctacgatcgattgtatcttcacgtttccattcgttctcagcagactttgtcaat
caaattattgactttaacaatgatattcataatgaggtgatagagctgcgggagtacggg
tcagacggtggtccatgggagttcaatctacgagacgtatttcgttggtgcgaattaata
gaatcaggtcgatcatcacatatagctggtgctcgtgatctttactatcaaaggtttcgt
actcaaagagatagagataaggtggataagacctttcagaaacattttggaagctctttg
gttccagaatgtccgccgaagttcaaggttctagatgataccatacaaattggtgaaaca
ttgttgagccgtcttgaccatttgggtgaaacacttcagactagtaggaccactatccga
gagtcggacctacttttctcccggctgatgcaaatggaagctgtagctcggtgcatcaat
ttaaagtggccttgtcttcttgttggcgggactgggactggaaagacaacaatgatatca
aacttggcaggactctgtaatgcgactcttgtcgaacattgtctctcaccttcttctgat
gtatcagaacttgtgggtggattcgagcaacgcgaagctttgtcaagagaaattcaagta
attaaagatctttgcatgttggcaaataagatcttaatggctgacgcattccagtcgaga
aagtctaaatggtgttgggatactcgggtcaatattatcgatgaaaccgttcaggcgcag
actcatgaacaaaaatcagttcataagcaacaggattctggtcactttgtttggcgggat
ggtattctggtggaggctctgttgaaaggctactggctactgctggaaaatgttaatctg
tgtccatcttctgttcttgatcgattaaattctgtaacagaacgcgacgggttcttgcta
ctctcggaatcaggaacacaagatggcgataataccaatcatactcatcggataataaaa
ccacacaaaaacttccggatattttttacgatgaatgctacaaatggagagatatcacgt
gcaatgagaaatcgttgcgtagaaatttccctactggac
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