KEGG   Fragilariopsis cylindrus: FRACYDRAFT_180356
Entry
FRACYDRAFT_180356 CDS       T04784                                 
Name
(GenBank) WD40 repeat-like protein
  KO
K12816  pre-mRNA-processing factor 17
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FRACYDRAFT_180356
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_180356
Spliceosome [BR:fcy03041]
 Complex C
  Other components
   Step II factors
    FRACYDRAFT_180356
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_VPS8 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st WDR54 Beta-prop_WDR75_2nd PQQ PD40
Other DBs
NCBI-ProteinID: OEU20913
JGI: 180356
UniProt: A0A1E7FSV8
LinkDB
Position
Unknown
AA seq 356 aa
MEPTKTTFHGEAESDYKGRSWMAPPSGMSSVLSLSPTIQEKMDDHKCFVPKKCVHRYTGH
NKGVQRIRLFPKTGHLLLSAGLDGKCKVWSVGGVGQRKVMRTYEGHKAAVRDVQFNHDGT
RFVSASFDRFLRLWDTESGKVLQTFGNKKVPYCVEFYPKDDNYFVVGCSDNKIVTYDATT
GEITQEYNHHLAPINAILFVDDDNGATKMVSSSDDKKILVWEWDIGVPIKYISDPTMHSM
PSLAMHPSQQFFVGQSLDNNLVCFQVGQKFKLSKKKKFSGHQVAGYACEPAFSPDGRFLM
SGDGKGRIFFWDWKMQKTLQKYKAHDSGPAIACVWHPLEPSVAFTCGWDGVIKMWQ
NT seq 1071 nt   +upstreamnt  +downstreamnt
atggaacccaccaaaaccacttttcacggggaagcagaaagcgactacaaaggacggtcg
tggatggcaccgccatcaggaatgtcatcggtcctttcattgtccccgacgatacaggaa
aaaatggacgatcacaaatgtttcgttccaaagaagtgtgttcatcgttacacaggacac
aacaaaggagtgcaacgaatacgactttttcccaaaacgggtcatttgttactcagtgcc
ggattggatggaaaatgcaaggtatggtcggttggtggagtcggtcaaagaaaggttatg
cgaacgtacgagggacacaaggcagcagtgagagacgtccaattcaatcacgatggtaca
cgatttgtctcggcgtccttcgatcgattcttacgactttgggatacagagagtggaaaa
gtcttacaaacatttggtaataaaaaagtaccgtactgcgttgaattttatcccaaagac
gataattattttgttgtaggatgtagtgataataagatcgtcacgtacgatgccactacc
ggtgaaatcacccaagaatacaaccatcatttagcacccattaatgcaatcctttttgtc
gatgatgacaacggcgcgactaagatggtatcatctagtgacgacaagaagatactagta
tgggaatgggatattggagtaccgatcaaatacatttccgatcccaccatgcattctatg
ccgtctttggccatgcacccatcgcaacagttcttcgttggacaatctcttgataacaat
ctcgtttgttttcaggttggtcaaaaattcaaactatcgaagaaaaagaagttcagtggc
caccaagttgcggggtatgcatgtgaacctgcattcagtccggatggacgcttcctaatg
agcggtgacgggaagggaagaatcttcttttgggactggaagatgcagaaaacattgcaa
aagtacaaggctcatgatagcggaccggctattgcttgcgtatggcatccattggagcct
tctgtagcttttacctgcggatgggatggtgtcatcaaaatgtggcaatag

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