Fragilariopsis cylindrus: FRACYDRAFT_180356
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Entry
FRACYDRAFT_180356 CDS
T04784
Name
(GenBank) WD40 repeat-like protein
KO
K12816
pre-mRNA-processing factor 17
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_180356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_180356
Spliceosome [BR:
fcy03041
]
Complex C
Other components
Step II factors
FRACYDRAFT_180356
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_VPS8
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
WDR54
Beta-prop_WDR75_2nd
PQQ
PD40
Motif
Other DBs
NCBI-ProteinID:
OEU20913
JGI:
180356
UniProt:
A0A1E7FSV8
LinkDB
All DBs
Position
Unknown
AA seq
356 aa
AA seq
DB search
MEPTKTTFHGEAESDYKGRSWMAPPSGMSSVLSLSPTIQEKMDDHKCFVPKKCVHRYTGH
NKGVQRIRLFPKTGHLLLSAGLDGKCKVWSVGGVGQRKVMRTYEGHKAAVRDVQFNHDGT
RFVSASFDRFLRLWDTESGKVLQTFGNKKVPYCVEFYPKDDNYFVVGCSDNKIVTYDATT
GEITQEYNHHLAPINAILFVDDDNGATKMVSSSDDKKILVWEWDIGVPIKYISDPTMHSM
PSLAMHPSQQFFVGQSLDNNLVCFQVGQKFKLSKKKKFSGHQVAGYACEPAFSPDGRFLM
SGDGKGRIFFWDWKMQKTLQKYKAHDSGPAIACVWHPLEPSVAFTCGWDGVIKMWQ
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaccaaaaccacttttcacggggaagcagaaagcgactacaaaggacggtcg
tggatggcaccgccatcaggaatgtcatcggtcctttcattgtccccgacgatacaggaa
aaaatggacgatcacaaatgtttcgttccaaagaagtgtgttcatcgttacacaggacac
aacaaaggagtgcaacgaatacgactttttcccaaaacgggtcatttgttactcagtgcc
ggattggatggaaaatgcaaggtatggtcggttggtggagtcggtcaaagaaaggttatg
cgaacgtacgagggacacaaggcagcagtgagagacgtccaattcaatcacgatggtaca
cgatttgtctcggcgtccttcgatcgattcttacgactttgggatacagagagtggaaaa
gtcttacaaacatttggtaataaaaaagtaccgtactgcgttgaattttatcccaaagac
gataattattttgttgtaggatgtagtgataataagatcgtcacgtacgatgccactacc
ggtgaaatcacccaagaatacaaccatcatttagcacccattaatgcaatcctttttgtc
gatgatgacaacggcgcgactaagatggtatcatctagtgacgacaagaagatactagta
tgggaatgggatattggagtaccgatcaaatacatttccgatcccaccatgcattctatg
ccgtctttggccatgcacccatcgcaacagttcttcgttggacaatctcttgataacaat
ctcgtttgttttcaggttggtcaaaaattcaaactatcgaagaaaaagaagttcagtggc
caccaagttgcggggtatgcatgtgaacctgcattcagtccggatggacgcttcctaatg
agcggtgacgggaagggaagaatcttcttttgggactggaagatgcagaaaacattgcaa
aagtacaaggctcatgatagcggaccggctattgcttgcgtatggcatccattggagcct
tctgtagcttttacctgcggatgggatggtgtcatcaaaatgtggcaatag
DBGET
integrated database retrieval system