Fragilariopsis cylindrus: FRACYDRAFT_181175
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Entry
FRACYDRAFT_181175 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_181175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_181175
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FRACYDRAFT_181175
mRNA degradation factors
3'-5' decay
Pan complex
FRACYDRAFT_181175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-ProteinID:
OEU20608
JGI:
181175
UniProt:
A0A1E7FR28
LinkDB
All DBs
Position
Unknown
AA seq
402 aa
AA seq
DB search
MDPSDPRHKAIPLPYCNAFCLDPPNPQNSRSSFGYPAATFQVVNRDDGHLYCLRRFDNIK
SVNPKIASTVLEQWASIEHPGIATLHQCFVSQRAVFFVHQYIPGTRSFLQVANPPTLSEP
VIWSAICQMVTVIRRVHGARLALRTLDLRHTLIQMDALRLRIFVNCLGIVDALEYESRKS
LQELQAEDMRNFGRWILSIVTGTNITISTDPQTLQNCERYCMQNYSRELRHFILTLSRSQ
NPPSILDVSRALSGRLMDELDSTQLSLMRTEKALSGEYESGRALRLLLKLGFVNERPENG
ANRRWSQSGDCYVLTLFRDYVFHQADGAGNPVMDLGHVVTALNKLDAADEEKIVLSSRDG
KSLMVVSYADVARCLDSTYHELCSGSTPPQALQRRQQQGQPY
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggatccatccgatccacggcacaaggcaattccattgccatactgcaacgctttttgt
ttggatccacccaaccctcaaaattcacgttcatcatttgggtaccctgctgctaccttc
caggttgtcaacagggatgacggacacttgtattgccttagacgattcgacaatatcaag
tcggtgaacccaaaaattgcttctactgtattggaacaatgggctagcattgaacaccca
ggaattgctactctccatcaatgttttgtttcacaacgtgcagtattttttgtacatcag
tatattcccggcacgcgaagtttccttcaagttgcaaatcctccaaccttgagtgaaccc
gtcatttggagtgccatttgtcaaatggtgactgtcattagacgagtccatggtgccaga
ttggctctgcgcacattggacttgcgtcataccttgatacaaatggacgcattgcgtttg
agaatattcgtcaattgcttgggtattgttgatgccctggaatatgaatcacgtaaatca
ttgcaagaattgcaagccgaggacatgcggaattttggacgatggattttaagtatcgtt
accggtacaaacattacaatttcaaccgatccgcaaaccttgcagaattgtgaacgttac
tgcatgcaaaattattcacgagaattacgacatttcatcttgaccttaagtcggagtcaa
aatcctccgtcgattttagatgtcagtagagccctgtcgggtcgtttaatggatgaatta
gattcgactcaactttccctaatgcgtacagaaaaagctttatcaggcgagtacgaatca
ggccgagcattgcgtcttttacttaaacttggattcgtcaacgaaaggcccgaaaatgga
gctaaccgtagatggtcgcaatcgggagactgttatgttttgacattatttcgtgattat
gtctttcatcaagccgacggtgcaggtaatccagtcatggatctgggtcatgtcgtgaca
gctctgaacaaattggacgcggctgatgaagagaaaatagttttgagctctcgtgatgga
aaatcattgatggtcgtgagctatgcagatgtggctcgatgcttggactcgacctaccac
gaattatgctctggatccacaccaccacaagcccttcagcgaagacagcagcagggtcaa
ccctattaa
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