Fragilariopsis cylindrus: FRACYDRAFT_181318
Help
Entry
FRACYDRAFT_181318 CDS
T04784
Symbol
CSB
Name
(GenBank) SNF2_N-domain-containing protein
KO
K10841
DNA excision repair protein ERCC-6
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRACYDRAFT_181318 (CSB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_181318 (CSB)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_181318 (CSB)
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
FRACYDRAFT_181318 (CSB)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
FRACYDRAFT_181318 (CSB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
WHD_Rad26_CSB
DEAD
HDA2-3
AAA_34
AAA_lid_TANC1
Motif
Other DBs
NCBI-ProteinID:
OEU20833
JGI:
181318
UniProt:
A0A1E7FSL9
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MWELHRQQAGGILGDEMGLGKTIQVASFLGSMAASRKLKAILIISPATLLQHWLKEMKRW
APGVRRFLIHQSGDTLSTTRQLDPSTFCGTAYVFVTTFENVRRNEDIYMNHRWSYVVIDE
AQKIRNPNAYITLACKKFKTPHRLALSGTPIQNDLRELWSIFDFVFPGRLGTLPAFETEF
ATPIKKGGYSNASPMQVQLSYRCALILKDLINPYLLRRLKKDIKEVQRMPGKKEQVLFCR
LSDCQRSMYEAFLQSDLVKKVFRGSVQLLGAITTLRKICNHPDLVSPPDEFASDPFSESI
LDNYGSDDDDTSQKIGDGTVDRYHELIERSGKLEILAKILPLWKKQGHRVLIFCQWRKML
DIIMDFVKSKGWKFGRLDGNTNVASRQRLVDTFNSDESYFGMLCTTRTGGVGLNLVGADR
VILYDPDWNPQTDAQARERAWRFGQEREVTVYRMICAGTVEEKIYQRQIFKTALSNSVLQ
DSKQRRLFTHKDLKDLFSLKADNGSVATGAEGITETAELTKGDGYVDPDDNEITANAKEQ
DNGETMQSVLKSRGLAGIFDHDVVEGNWKSKRASVREMEAKAKKLSREALQNLRQSVAPV
NDLGSRFGSSGARSNSILSSIAERNTEILNAGTLSSADEIKQNTQLLKDLRNFVKTRVPT
TNELLDTFSSHVTSSDAAVFRRLLKSIATLKNGSWILK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtgggagctgcatcgtcaacaggcgggggggattcttggtgatgaaatgggtcttggc
aaaacgattcaagttgcttcatttttgggttctatggccgcaagcagaaaactgaaagcc
atcctcatcataagccctgcaacattgcttcagcactggctgaaggaaatgaaaagatgg
gcacctggcgtacgaagattcttgattcatcaatcgggggatacgctgtcaacaacaaga
caacttgatccatcaacattctgtggtacagcatatgtctttgtaacaacttttgaaaat
gttagaagaaatgaagacatatacatgaatcacaggtggagctacgtggttatagatgaa
gcacaaaaaattagaaatccaaatgcgtatattacattagcttgcaagaaatttaaaact
ccacatcgtctcgcattaagtggaacacctatacaaaacgatttaagagaattgtggtcc
atttttgatttcgtctttcccggacgcttggggactttgccagcttttgagactgagttt
gctactccgattaaaaagggaggatatagtaatgcttcgcccatgcaggttcagctttca
tacagatgtgcactaatcttaaaagatctgatcaatccatatctactaagaaggttgaag
aaagacattaaagaagttcagcgaatgccggggaagaaagagcaggtattattctgtcga
ttgagcgactgtcagcgttctatgtatgaagcctttcttcagtcagatctggtcaagaaa
gtttttcgaggatctgtgcaacttttaggagcgatcactacgctgagaaagatttgcaat
caccctgatcttgtttctcctcccgacgaatttgcttctgaccctttttccgagagtatt
cttgacaattatggtagcgacgatgacgatacttctcagaagattggagacggtaccgta
gatagatatcatgaattgattgaacggtcagggaaattggagatattggcaaagatctta
ccactttggaaaaaacaggggcatcgtgtactaatcttttgtcaatggcggaagatgctt
gatattatcatggattttgttaaatctaaggggtggaagttcggtagattagatgggaat
actaatgtggcgtcacgacaacgacttgttgatacgttcaactcagatgaatcatacttc
ggtatgttatgcacaacccgaacaggtggtgtgggccttaatcttgtcggggctgatcgt
gtcattctctacgatcctgactggaacccacagactgacgctcaagccagggaacgagcg
tggagatttggtcaagaaagagaagttacagtttatcgtatgatttgtgcaggcactgtt
gaagaaaagatatatcaaagacagatattcaaaacagccttgtcaaatagtgtcctacaa
gactccaagcaacgtcgactttttactcacaaagacttgaaggatctcttcagtctcaaa
gctgacaatgggagcgtcgctacaggagcggaagggataacagagactgcagaattgacc
aaaggggatggatatgttgatcctgatgataacgaaattactgccaatgctaaagaacaa
gataacggagaaacgatgcagtccgttttaaagagtagaggcctagctggaatttttgat
catgacgtcgtagaaggcaattggaagtcaaagagagcatctgtaagagaaatggaagca
aaggcgaaaaaattatccagagaggctttgcaaaatcttcggcagagcgttgctcccgta
aatgatttagggagtcgttttggtagtagtggtgctagaagcaatagtatactatcgtca
attgctgagcgtaacaccgaaattttgaacgctggaacactgagtagtgcagacgaaata
aagcagaatacgcaattgttaaaggatcttcgcaattttgtaaagactcgtgtaccaacg
acaaacgaattactcgatacgttttcctcacatgtgacgtcttcggatgcagctgtgttc
agaagactcctgaagtcgattgctactcttaaaaatggctcctggatcttgaaatga
DBGET
integrated database retrieval system
