Fragilariopsis cylindrus: FRACYDRAFT_181710
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Entry
FRACYDRAFT_181710 CDS
T04784
Name
(GenBank) DEAD-domain-containing protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_181710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_181710
03009 Ribosome biogenesis [BR:
fcy03009
]
FRACYDRAFT_181710
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRACYDRAFT_181710
Spliceosome [BR:
fcy03041
]
Complex A
U1 snRNP components
U1 related factors
FRACYDRAFT_181710
Complex B
FRACYDRAFT_181710
Ribosome biogenesis [BR:
fcy03009
]
Eukaryotic type
Pre-60S particles
Helicases
FRACYDRAFT_181710
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SUB1_ProdP9
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
OEU19270
JGI:
181710
UniProt:
A0A1E7FM83
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MKVVENKKDDDGRLPCWNSFRDAPFEEPIQQALSGAGFTEPSPVQAQAWPAALSGKDVIG
VAKTGSGKTLGFLLPVFHRISTKNLPLGATEAMTMLQKGRGLLVSPTRELAMQIHKECVK
FGTPIGISATVLYGGANANAQIQELRKGGQIVVATPGRLCDLLDRKSCLTLNNCHFIILD
EADRMLDMGFEPQLKQITTALPEKSSRQTLFFTATWPKAVRKVAAKFMRGEQETIEIFIG
EGTANGELVANKSVKQTFIEAQDDMKDKILYDFLCGLDEKASVVIFANTKRRVDFVAKMF
WQEGFTTCAVHGDKQQHERDTSLRKFVSKECAILVATDVAARGLDIKGVTHVVNFDMARD
CDSYIHRIGRTGRAGEVGEAVTFWNPDYDKVCSPALVKIARDAGQEVPAFLQKYEKIKGS
KQWKITDAEKAKDVLSASSS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcgtcgaaaataagaaagatgatgatggacgactaccatgttggaattcgttt
cgagatgcaccatttgaagaaccaatccaacaggccttatccggtgctggattcacagaa
ccgagtccggtgcaagcccaggcttggccggcagccctatccggaaaagatgtgattggt
gtcgcaaaaacagggagtgggaagacactcgggtttctgttaccggtgtttcatcgaata
tccacgaagaatctgccattgggggcgaccgaagccatgactatgttacaaaaaggaaga
ggattattagtatccccgacacgtgaattggccatgcagatacacaaggaatgtgtgaaa
tttggtactcccatcggtatctccgcgacggtattgtacggtggtgccaatgccaatgca
caaatacaagaattacggaagggtggtcaaatagtcgtagcgacaccgggacggttgtgt
gatttactcgatcgaaaatcatgtttgaccttgaataattgtcattttattattctagat
gaagcagatcggatgttagatatgggcttcgaaccacaacttaaacaaatcactactgcc
ttacccgaaaaatcatctcgacagaccttgttctttaccgccacgtggcccaaggcggta
cggaaagtcgcagcgaagtttatgcgaggggaacaggaaactattgaaatttttattggg
gaaggaacagcgaatggtgaactggtggcgaataagtctgtgaaacagaccttcatcgaa
gctcaagatgatatgaaagataaaatattatatgacttcctatgtggactggatgaaaaa
gcctccgtggttatttttgccaacacaaaacgtcgagtggatttcgtggccaagatgttc
tggcaggaaggttttacgacttgtgcggtacatggagataaacaacaacacgaacgtgat
acatccttacgaaaatttgtttccaaggaatgtgctattttagtggccacggacgtcgca
gcacgaggtctggacattaaaggtgtcacacacgtcgtcaatttcgatatggcacgagat
tgtgattcgtacatacatcggattggacgaaccggtcgagcgggtgaggtgggagaagct
gtgaccttttggaaccccgactacgataaggtgtgctctcctgccctggtcaagatcgct
cgagatgcgggacaagaagtacccgcctttttacaaaagtacgaaaaaattaaagggagc
aaacaatggaaaataacagatgctgaaaaagccaaggatgtcctcagtgcaagtagttcc
taa
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