KEGG   Fragilariopsis cylindrus: FRACYDRAFT_181715
Entry
FRACYDRAFT_181715 CDS       T04784                                 
Name
(GenBank) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03020  RNA polymerase
fcy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FRACYDRAFT_181715
  09124 Replication and repair
   03420 Nucleotide excision repair
    FRACYDRAFT_181715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fcy03021]
    FRACYDRAFT_181715
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_181715
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_181715
Transcription machinery [BR:fcy03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     FRACYDRAFT_181715
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FRACYDRAFT_181715
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FRACYDRAFT_181715
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-ProteinID: OEU19946
JGI: 181715
UniProt: A0A1E7FP79
LinkDB
Position
Unknown
AA seq 180 aa
MFYVKTLEHEIVLQPSHFGPKLKPTIIRLLKEEVEGLALAEYGFVVNVIEVPEDQIKSGI
IEYDTGDVVFSVKYTALLLRPFVNEVLDAVVSQCNTLGFFAYVGPLRVFVSKHSMPEDML
NGWNTDKDSWVSDDKEVIISSGCGVRLRIKGRTVEQGNITAIGTIKDSYLGLVSEEDDEE
NT seq 543 nt   +upstreamnt  +downstreamnt
atgttttacgtcaaaacattagaacatgaaattgttttacaaccatctcattttggaccg
aagcttaaaccaacaattatacgtttattaaaagaagaagtagaaggtttagcattggca
gaatatggatttgttgtaaatgttattgaagttcctgaagatcaaattaaatcaggtata
attgaatacgatacgggtgatgttgtttttagtgtcaaatatacagcattattactaaga
ccattcgtcaacgaagtattagatgctgttgttagtcaatgtaacacgcttggtttcttt
gcatatgttggcccactacgtgtatttgtttcaaaacattccatgccagaagatatgtta
aatggatggaataccgataaagattcatgggttagtgacgacaaagaggtaataatttct
tccggttgtggtgtccgattacggattaagggccgaactgtcgaacaggggaacataaca
gcaatcggtactattaaggatagttacttaggacttgtttcggaagaggacgatgaagag
taa

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