Fragilariopsis cylindrus: FRACYDRAFT_185561
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Entry
FRACYDRAFT_185561 CDS
T04784
Symbol
Top2b_1
Name
(GenBank) type II DNA topoisomerase
KO
K03164
DNA topoisomerase II [EC:
5.6.2.2
]
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_185561 (Top2b_1)
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_185561 (Top2b_1)
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
FRACYDRAFT_185561 (Top2b_1)
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Topoisomerases
FRACYDRAFT_185561 (Top2b_1)
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Chromosome condensation proteins
Other regulators of chromosome condensation
FRACYDRAFT_185561 (Top2b_1)
Centrosome formation proteins
Centriole proteins
FRACYDRAFT_185561 (Top2b_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_topoisoIV
TOPRIM_C
DNA_gyraseB
Toprim
HATPase_c
RRM_Rrp7
Motif
Other DBs
NCBI-ProteinID:
OEU16511
JGI:
185561
UniProt:
A0A1E7FEB3
LinkDB
All DBs
Position
Unknown
AA seq
1258 aa
AA seq
DB search
MLQRFCGQSFKFRNRSLVSFGFNTYDSTRISTIISPSCSNNDIYNVSAGHFFSSSTATTS
VTERNSTESKLDNINERSVEEQYIRKTPLEHVLLRPGMYVGPTERLPPIDCWVLDPSPKP
LGTKKNISFKMIQKEYGLIPALQKVFDEILVNATDNQLRHPKSCTLLDVSIEQGSKSKEP
IIRIWNNGKGIPIKIHKEENMYLPEMLFGHLLTGSNFDDTEKRLTGGRHGYGAKLSNIFS
KSFTIETVDCRQRLHYKQTWTKNMTEAGEPQITTLDKSDAKEDYTCISFVPDIQRLSGDP
KITTINNHDYALMCRRVVDAAGCAAGKLEVILNGHDVSMESFADYINLYRKKDKLSSEMC
YTKIGSRWNVGIGLSDSNSFVSVSFVNGMFTSRGGTHINAIINQVVKRIQEKATKSDPSL
SNVLTPGLIRRNIFLACNAYIENPTFDSQMKDHLTSNPSSFGSSYTLTEKYLKELVRTEE
NGGPGIVEEVLRVAKGQQQANLFKQVGGKKTKRQLLSIPKLEDAHNAGSNGDSKCTLILT
EGDSAKALAVAGLEIIGRDKFGVFPLRGKFLNVRTCRVDQLSNNAEVKALFAILGLNFDK
EYDTMEERNELRYSHIMLMTDQDEDGSHIKGLVINFFRHFWPKLLKPAVDEPFDQPFLSS
FATPLLKAIRKNSKKYLSFYSVAEYNAWRASLIGTNDDIGKWKVKFYKGLGTSTPAEAKE
YFSAFDKHHVPFIWKSELDGELLDKVFDKSRAADRRDWITSVYDPESTLSYDAEGRITYE
DFVNKEMIHFSNSDNVRSIPSVIDGLKPSQRKVLHACFKRKLKSEIKVAQLSGYCAEHTA
YHHGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRLAGGEDAASPRYIFTHLSPITRY
LFPEDDDMLLDYLEDDGQSIEPKFFCPIIPLLLVNGTQGIGTGWSTFIPQHKPLSVVDYI
RAKLDQTLSIPQIEPYSRGFEGVIDRQENGYASYGRMRILDDKTIFIDELPIGIWTNNYK
TFLLKMQSKGTIVDFKEDHTTTKVSFTVKLKSAELHRMQQSGLEKAFKLNSNLPMTNMNA
FDDQSAIQKFVSAESIADTYFPVRMSLYHDRKSMLMSEMNYKTSVLENKARFIQLVSEGQ
IELLGGKMSKDKSFSVLESFGFSTTDELNQLRNNNSIYRKQIHEDSSGNDVNIVEQDTDN
ETSSFDYLFKMPLSSLTSDRIGALKKESSQTTSDLNAIRELQPEEIWLSDLDKLAQYL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaacgtttctgtggacaatcgtttaaattcagaaatagatctttggtctctttt
ggattcaatacctatgattcgacgagaatctcaacaatcatctcgccatcatgcagcaat
aatgatatttacaacgtttctgcagggcattttttctcctcttctacagcgacgacaagt
gtcacagaaaggaattcgacagaatcaaaactggataatataaatgaaagatctgtagag
gaacaatacatcagaaaaactccacttgaacatgttcttttgcgtcccggtatgtacgtt
ggcccaactgaacgtcttccacctattgattgttgggttttagatccttccccgaaaccg
ctcggtacaaaaaagaacatctcatttaagatgatacaaaaggaatacggcttaatacca
gcattgcaaaaagttttcgatgagatcctagtcaatgcaacagacaatcaattgcgacac
ccaaaatcttgtacgttactagatgtatccatcgaacaggggagcaagagcaaagaaccg
attattcgcatatggaacaatgggaaagggataccaattaaaatccacaaggaagaaaat
atgtaccttcctgaaatgctctttggtcacttattgactggaagtaacttcgatgacact
gagaaacgacttacgggaggtcgacatggttacggtgccaaactttccaacatcttttcc
aaatcattcacaatagaaacagttgattgtcgacaacgacttcattataaacaaacgtgg
actaagaatatgacagaagcgggagaaccgcaaatcacaacgctagataagtccgatgca
aaagaggactatacctgtattagctttgttcctgatatacaacgactttcaggtgatcca
aaaataacaacaattaataatcatgattatgccttaatgtgtcgacgagtcgtcgatgca
gcagggtgtgctgcggggaaattagaagtcattttaaatggacatgatgtatcaatggag
tcttttgcagactacatcaatctatacagaaaaaaagataaattgtcatcagaaatgtgc
tatacaaagatagggtcccggtggaatgtaggcattggactgtcagatagtaactcattc
gtgtcagtatcatttgtgaatggcatgttcacgtcgagaggaggaacacatatcaatgct
attatcaatcaagtggtcaaacgcattcaagaaaaggccacaaaatctgatccaagtctc
tcaaatgtcctaacaccgggtctaatacgtaggaatatatttctggcatgtaacgcatat
atcgagaatccaacttttgactcacaaatgaaagaccacctgacgtctaatccaagcagt
ttcggaagctcgtatactctcactgaaaaataccttaaagaactagtccgaaccgaagag
aatggaggaccaggtatcgttgaagaagtattacgtgtagccaaaggacaacaacaagca
aatcttttcaaacaggtcggaggaaagaagaccaagcggcagctactttcaatacccaag
ctcgaagatgcacacaatgcaggttcgaatggtgattcgaaatgcactctaatactgaca
gaaggagattctgcaaaagcattggcggttgctggattagaaattattggaagagacaaa
tttggtgtttttcctctccgtggaaagtttctcaatgttcgtacctgtcgagtagatcaa
ctatcaaataatgcggaagtgaaggccttatttgcaattcttggactcaattttgataag
gagtacgatactatggaagaacgcaacgagcttcgatatagccacattatgctcatgaca
gatcaagacgaggatggatcacatatcaagggactggtaatcaatttctttcgtcacttt
tggccgaaattgttgaaaccagcagtcgacgaaccttttgaccaaccgtttctctcgtct
tttgcgacaccccttctgaaggcaattaggaaaaatagtaaaaaatacctatctttttac
tccgtggcagaatacaatgcatggcgagcctcccttattggtaccaatgatgatatcggg
aaatggaaagttaagttctataaaggactcggtactagtacgccagcagaagccaaagag
tacttttctgcattcgataaacatcatgtaccgttcatttggaagtcagaattagatggt
gagcttctagataaagttttcgacaagtctagggcagctgaccgtcgggattggatcact
agtgtatacgaccctgaatcaaccttatcatatgatgccgaaggtcgtatcacttacgaa
gactttgtgaacaaagaaatgattcacttttccaacagcgataacgtcagaagcatacca
agcgtaatcgacggacttaaaccatcccaaagaaaagtactgcatgcctgtttcaagaga
aagttaaaatctgaaatcaaggttgctcagcttagtggctattgcgctgaacacactgct
tatcatcatggtgaagcttccttacagtcaactatcatcggaatggctcaagactttgtt
ggatcaaacaatatcaatctgttggtcccgtcaggtcagtttggtacgcgtctagcgggg
ggagaggacgcagcttctccacgttacatttttacgcacttatctcctattaccagatat
ctcttcccagaggatgatgatatgctccttgattacctcgaggacgatggtcaatcgatc
gagccaaaattcttttgtccaatcattcctttactgttggtcaatggtactcaaggcatc
ggaactggttggtccacattcattccacagcacaaaccgttgagtgttgtagactatatt
agagcgaagcttgaccaaacacttagtattcctcagattgagccatattcgcggggattt
gagggagttattgatcgccaagaaaatggttacgcaagctacggaaggatgcgtattctc
gacgacaaaacgatatttatcgacgagctaccaattggtatttggactaataactataag
acttttttattgaagatgcaatcaaagggaactattgttgactttaaagaagaccataca
actacaaaggtttcgtttacagtgaaactgaaatctgccgaacttcacagaatgcaacaa
tcggggttggaaaaagcttttaagctgaactcgaatcttccaatgacaaatatgaatgct
tttgatgaccaaagtgcgattcagaaatttgtttccgcagaatcaattgctgatacttac
tttccggtaagaatgtctctttaccacgaccgaaagtcaatgttgatgtcagaaatgaat
tataaaacttccgtcttggaaaacaaggcccgtttcatccaactagtttcggaggggcaa
atcgaactacttggtggtaaaatgtcaaaagataaatcattttctgtgcttgaatcgttt
ggattcagtacaacggacgaactgaatcaacttcgcaacaataatagcatttaccgcaaa
caaattcatgaggattcgagtggtaacgatgttaatattgtggaacaggacacagacaac
gagacgtcttcgttcgattatctcttcaagatgccattgtcatctctaaccagtgacagg
attggagcattaaaaaaagagtcatcccaaacaacgtctgacctaaatgcgatacgggag
ttgcaaccagaagaaatatggttatctgatttggataaactagcccaatatttataa
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