Fragilariopsis cylindrus: FRACYDRAFT_187464
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Entry
FRACYDRAFT_187464 CDS
T04784
Name
(GenBank) Vps53_N-domain-containing protein
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fcy04131
]
FRACYDRAFT_187464
Membrane trafficking [BR:
fcy04131
]
Protein recycling
Others
EARP complex
FRACYDRAFT_187464
Endosome - Golgi transport
Tethering complex
GARP complex
FRACYDRAFT_187464
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
COG4_N
COG7
Syndetin_C
KASH_CCD
CCDC32
FadA
Exonuc_VII_L
DUF4337
DUF5082
FUSC
DUF1664
SKA2
DUF1690
Motif
Other DBs
NCBI-ProteinID:
OEU15407
JGI:
187464
UniProt:
A0A1E7FB78
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MTSKQRPPPSPSSLKATRVILPPLSSATAAISHNPNRLLDAFDTYVSNRRSGGTKPDPID
FINQHYSSESLLVSNLPEIRDAISDRMNRLDDRISSALQRQSESAEATQKHVQDAKVSVA
SLEKRIRQVQSKASQSEKTVREITKDMKRLDCAKRHLQRTITTLKRLHMLVHAVEGLRQA
CLLKPHPDYQSASHLVDATRLLLQHFDSYTQKVEQMRLLNTKVIDLQGELKFRLVRGFRL
VGFGVEKTREMEKKKSKLKSLGQEESKKFQVPPMMTPTTMAGGILLIDAIGKEARIEFMT
GIVQDHLVEYSRIYKPANKEQPKEKPRVSSFMAQPEIEPEGDIKPESALEFVEKRFLWFQ
YLLAEIQKKYPEVFPPYWNLEYHLTKNFLRRTRSHLLALFAGPTKDPDSNNATILLKALQ
KTIIFEKDVSSALQREYGVIFQHKSDTNNDDGRAPTLQEPVEPLLGLASSAFDKYMRPYI
ALEERSMDEQLVSSLEDRTVDTRGNHPVFTTSTKLFVYIKGSITRCTALTKGNTFYLLYT
AFQDSLRKYSQVLSMKLPPPLAQKSIGPLNMPPVPFASKNIQDNTPLQMVSYRVPNGEEV
TVCHVIGTCEYCAETVEALEDLIRDTVDDEFKSKIDMMGQQEVFHEITAKAIHILVSGME
NRLDAPLKTMTSINWATFVEVGEESDYVRDMHNEIQPYVATTRGLIPKSYYQSFCDKFAL
GFTTTYYDSLVRLKSISEPGSQQLLLDVYNLKTLILKLPVLEKSVASTAATRKSVATGST
IAPAMYTKMVQKQFKKIELLLKMTATPINLLIDVFKDQWHGGTAHDLQQVMSLKGLQRGQ
QAKMFEKFGMDPVSARKGAAANVTSATIVSERFQVVQDQAKKVDMSQMKQRVNDFRNAFR
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaagcaaagacctcctccatctccttccagtttgaaagcaacacgtgtcatt
cttccgcctctctcctctgcaactgctgccatttcacacaatccaaaccgtctcctcgat
gcatttgatacatatgtgtcgaaccgtcgcagtggcggtacaaagcccgatccgattgat
ttcatcaatcagcattattccagcgagtctttattggtttcaaaccttccagaaattcgc
gacgcaataagtgaccgcatgaaccgactcgacgatcgaatttctagcgcacttcaacga
caatcagaatcagcagaagcgacacaaaaacacgtacaggatgccaaggtcagtgtggcc
tcgctagaaaaacgtattcgtcaagtccaaagcaaagcctcacaatcagaaaagacggtt
agggaaatcacaaaggatatgaaacgattggattgcgctaaacgtcatttgcaaaggacg
attacaaccctgaaacgtttgcatatgttagtgcatgcggttgaaggattgaggcaggcg
tgtttgctaaaaccccatcctgattatcagtctgcctcgcatctagtcgatgcaactagg
ttgctgttacaacattttgattcgtacacacaaaaggtggagcaaatgcgtctattaaat
acaaaggtaattgatttacagggagaactaaagtttaggttagttcgtggatttaggttg
gttggttttggtgtcgaaaaaacacgtgaaatggaaaaaaagaaaagtaagctcaaatca
ctcggacaagaagaatcaaagaaatttcaggtaccacctatgatgacacctactacgatg
gctggaggtatactattgatcgatgctattggaaaggaagcaaggattgaattcatgaca
ggtattgtccaagatcacttggtcgaatacagtcggatttataaaccggccaacaaagag
caacccaaggaaaaaccacgtgtttctagctttatggcgcagccggaaatagaacccgaa
ggagatatcaaaccggagtccgccttggaatttgtagagaaacgatttctatggtttcaa
tatttgttagcagaaatccagaaaaaatatccagaagtcttcccgccgtattggaatttg
gaataccacttaaccaaaaactttttgagaaggacgcgtagccacttgttggcgttgttt
gctggacctacgaaggatcccgattcaaataatgctacaattttactgaaagccttgcaa
aagactatcattttcgagaaggacgtatccagtgcgttgcaaagagaatacggcgttatt
tttcagcataaatctgacacaaataatgacgatggaagagctccaacactacaggaaccc
gttgagcctctattgggattggcgtccagtgcgtttgataaatatatgcggccttacatt
gccttggaggagagaagtatggacgaacagcttgtttcttctttagaggataggacagtc
gatactcgtggaaaccatcctgtgttcacaacttccacaaaactatttgtttatattaaa
ggaagcatcacacgatgtacagctctcacaaagggaaacacgttttatctcctatatacg
gcgtttcaggactctcttcgcaaatactcgcaagtgctatcgatgaaacttccaccacca
ctggcacaaaaaagtataggcccattgaatatgcccccggtaccatttgccagcaaaaat
attcaagacaatactcctttgcagatggtttcgtatcgagtaccaaatggagaagaggta
actgtttgtcatgtaattggaacctgtgagtactgcgcggaaacagtagaagcgcttgaa
gatcttattagagatacagtggacgatgagtttaagtcaaagattgatatgatgggacag
caagaagtatttcacgaaatcactgccaaggctattcatatcttggtttctggaatggag
aatcgtttggatgcacctttgaagacaatgacctcgatcaattgggcgacgtttgttgag
gtcggcgaagagtcagattacgtccgcgatatgcacaacgaaattcaaccctatgtagct
accacccgtggtctaataccaaaatcgtactatcaaagtttttgtgacaaatttgcgctc
gggttcactactacgtactacgactcattggttcgcttaaaatcaatcagtgagccaggg
tctcaacagttgcttttggacgtgtacaatttaaaaaccttgattctgaagctccctgtc
ctggaaaaatcagtcgcttccaccgcagcaacgcgaaaatcggtcgcaactgggtctaca
attgcacctgctatgtacacgaaaatggtacaaaagcaattcaagaagatcgagctctta
ctaaagatgacagcaacacctatcaatcttctcattgatgtattcaaagaccaatggcac
ggcggaacagctcacgatctacagcaggtcatgtcgttgaaaggactgcaacgcggccaa
caggcgaaaatgtttgaaaaattcggtatggatcccgtatcggcgagaaaaggagctgct
gcgaacgttacatcggcaacaattgtatcagaaagattccaagttgtacaggatcaagct
aaaaaggtagatatgagtcaaatgaagcaaagggtcaacgactttagaaacgcgttccgt
taa
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