KEGG   Fragilariopsis cylindrus: FRACYDRAFT_187556
Entry
FRACYDRAFT_187556 CDS       T04784                                 
Symbol
Rfc3a
Name
(GenBank) replication factor C 3
  KO
K10756  replication factor C subunit 3/5
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03030  DNA replication
fcy03410  Base excision repair
fcy03420  Nucleotide excision repair
fcy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FRACYDRAFT_187556 (Rfc3a)
   03410 Base excision repair
    FRACYDRAFT_187556 (Rfc3a)
   03420 Nucleotide excision repair
    FRACYDRAFT_187556 (Rfc3a)
   03430 Mismatch repair
    FRACYDRAFT_187556 (Rfc3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fcy03032]
    FRACYDRAFT_187556 (Rfc3a)
   03036 Chromosome and associated proteins [BR:fcy03036]
    FRACYDRAFT_187556 (Rfc3a)
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_187556 (Rfc3a)
DNA replication proteins [BR:fcy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    FRACYDRAFT_187556 (Rfc3a)
  DNA Replication Termination Factors
   ELG1-RFC complex
    FRACYDRAFT_187556 (Rfc3a)
Chromosome and associated proteins [BR:fcy03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    FRACYDRAFT_187556 (Rfc3a)
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     FRACYDRAFT_187556 (Rfc3a)
  Check point factors
   HRAD17(Rad24)-RFC complex
    FRACYDRAFT_187556 (Rfc3a)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rep_fac_C AAA Rad17 AAA_22 AAA_23 ABC_tran
Other DBs
NCBI-ProteinID: OEU15137
JGI: 187556
UniProt: A0A1E7FAF8
LinkDB
Position
Unknown
AA seq 353 aa
MLWVDKYRPTDLVSLDYHDDISQRLESLAKNPASLPHLFFYGPSGAGKRTRISAFLGALF
GPSAHKLKLNQREFTTPTGRTVEIHMISSDYHIELSPGDAGTSDRFVIQDVLKDIASSKN
IRSSTEIKVVVLHQVDRLSKQAQAALRRTMEKYAVTCRLILCCDSPSKLIAPLRSRCLGI
RVAAPCEDEIAKILKTVASKEEFGLPNSVAIKLARESDRNLRKALLMLEAAKVQAAGNGA
IPENQYLPSADWEVYIRQLATDITKEQSPQTLMAAREKLYELLVNCIPASTILKSLTGEL
LNNLDDSVKLEVIEWASFYEHRIAMGSKDIFHLEAFVAKFMAIYKKYLNDLFG
NT seq 1062 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtaccgtcctaccgatttggtttctctcgattatcacgatgat
atcagtcaacgacttgaatcactggcgaagaacccagcgagtcttccccatctatttttc
tacggtccatctggagcgggtaaacgtactcgaatcagcgcctttttgggagctttattt
ggcccatccgctcacaaattaaaactcaaccaaagagagtttaccacaccaacgggacga
actgtagaaatccacatgattagctccgattatcacatcgaactctctcccggagatgct
ggaactagcgatagattcgtcatacaggatgtcctcaaagatatcgcatcgtcgaagaat
attcgtagctcaactgaaatcaaagtagtggtcttgcatcaggtagatcgattaagcaaa
caggcgcaagctgctcttcgtcggacaatggagaaatacgcagtgacctgtcgattaatt
ctatgttgtgactcccctagcaagcttatagctccactccgatctcgttgtcttggtatt
cgcgtcgcggcaccatgcgaagatgagattgcaaagatcctcaaaacggtagcatctaaa
gaagaatttggtcttcccaactccgttgcgatcaaacttgctagagaaagtgaccgcaat
cttcgcaaggctttgctcatgctggaagctgctaaggtacaggctgctggaaatggtgcg
attccagagaaccaatatcttccgtctgccgactgggaagtatacattagacagttggcg
acagacattacgaaagagcaaagtccccaaacacttatggcagcgagggaaaaactatat
gaactactagtcaattgcattccagcaagtaccatattgaagagcctcacgggggagcta
ttgaacaatttagatgattcggtcaaattggaagtcatcgaatgggcaagcttttatgaa
catcgtattgctatgggaagcaaggatatttttcacttagaggcctttgttgccaaattt
atggctatctacaaaaagtatttgaacgatttgtttggctag

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