Fragilariopsis cylindrus: FRACYDRAFT_187556
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Entry
FRACYDRAFT_187556 CDS
T04784
Symbol
Rfc3a
Name
(GenBank) replication factor C 3
KO
K10756
replication factor C subunit 3/5
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03030
DNA replication
fcy03410
Base excision repair
fcy03420
Nucleotide excision repair
fcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRACYDRAFT_187556 (Rfc3a)
03410 Base excision repair
FRACYDRAFT_187556 (Rfc3a)
03420 Nucleotide excision repair
FRACYDRAFT_187556 (Rfc3a)
03430 Mismatch repair
FRACYDRAFT_187556 (Rfc3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_187556 (Rfc3a)
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_187556 (Rfc3a)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_187556 (Rfc3a)
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
FRACYDRAFT_187556 (Rfc3a)
DNA Replication Termination Factors
ELG1-RFC complex
FRACYDRAFT_187556 (Rfc3a)
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
FRACYDRAFT_187556 (Rfc3a)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
FRACYDRAFT_187556 (Rfc3a)
Check point factors
HRAD17(Rad24)-RFC complex
FRACYDRAFT_187556 (Rfc3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rep_fac_C
AAA
Rad17
AAA_22
AAA_23
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
OEU15137
JGI:
187556
UniProt:
A0A1E7FAF8
LinkDB
All DBs
Position
Unknown
AA seq
353 aa
AA seq
DB search
MLWVDKYRPTDLVSLDYHDDISQRLESLAKNPASLPHLFFYGPSGAGKRTRISAFLGALF
GPSAHKLKLNQREFTTPTGRTVEIHMISSDYHIELSPGDAGTSDRFVIQDVLKDIASSKN
IRSSTEIKVVVLHQVDRLSKQAQAALRRTMEKYAVTCRLILCCDSPSKLIAPLRSRCLGI
RVAAPCEDEIAKILKTVASKEEFGLPNSVAIKLARESDRNLRKALLMLEAAKVQAAGNGA
IPENQYLPSADWEVYIRQLATDITKEQSPQTLMAAREKLYELLVNCIPASTILKSLTGEL
LNNLDDSVKLEVIEWASFYEHRIAMGSKDIFHLEAFVAKFMAIYKKYLNDLFG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggttgacaagtaccgtcctaccgatttggtttctctcgattatcacgatgat
atcagtcaacgacttgaatcactggcgaagaacccagcgagtcttccccatctatttttc
tacggtccatctggagcgggtaaacgtactcgaatcagcgcctttttgggagctttattt
ggcccatccgctcacaaattaaaactcaaccaaagagagtttaccacaccaacgggacga
actgtagaaatccacatgattagctccgattatcacatcgaactctctcccggagatgct
ggaactagcgatagattcgtcatacaggatgtcctcaaagatatcgcatcgtcgaagaat
attcgtagctcaactgaaatcaaagtagtggtcttgcatcaggtagatcgattaagcaaa
caggcgcaagctgctcttcgtcggacaatggagaaatacgcagtgacctgtcgattaatt
ctatgttgtgactcccctagcaagcttatagctccactccgatctcgttgtcttggtatt
cgcgtcgcggcaccatgcgaagatgagattgcaaagatcctcaaaacggtagcatctaaa
gaagaatttggtcttcccaactccgttgcgatcaaacttgctagagaaagtgaccgcaat
cttcgcaaggctttgctcatgctggaagctgctaaggtacaggctgctggaaatggtgcg
attccagagaaccaatatcttccgtctgccgactgggaagtatacattagacagttggcg
acagacattacgaaagagcaaagtccccaaacacttatggcagcgagggaaaaactatat
gaactactagtcaattgcattccagcaagtaccatattgaagagcctcacgggggagcta
ttgaacaatttagatgattcggtcaaattggaagtcatcgaatgggcaagcttttatgaa
catcgtattgctatgggaagcaaggatatttttcacttagaggcctttgttgccaaattt
atggctatctacaaaaagtatttgaacgatttgtttggctag
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