Fragilariopsis cylindrus: FRACYDRAFT_188581
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Entry
FRACYDRAFT_188581 CDS
T04784
Name
(GenBank) DEAH-box nuclear pre-mRNA splicing factor
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_188581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_188581
03009 Ribosome biogenesis [BR:
fcy03009
]
FRACYDRAFT_188581
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FRACYDRAFT_188581
Spliceosome [BR:
fcy03041
]
Complex A
U2 snRNP components
U2 related factors
FRACYDRAFT_188581
Complex B
FRACYDRAFT_188581
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
FRACYDRAFT_188581
Ribosome biogenesis [BR:
fcy03009
]
Eukaryotic type
90S particles
Helicases
FRACYDRAFT_188581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ATPase
T2SSE
Myosin_head
Flavi_DEAD
ResIII
AAA_30
SRP54
TrwB_AAD_bind
TsaE
Motif
Other DBs
NCBI-ProteinID:
OEU13262
JGI:
188581
UniProt:
A0A1E7F502
LinkDB
All DBs
Position
Unknown
AA seq
373 aa
AA seq
DB search
MSDRRRNRIDLGESTSKKNKEDINVWTGKPFSQRYYDILDKRTKLPVYQFKDELIKKILE
NQSIVVEGETGSGKTTQIPQFLLEAGLADQGKTCVACTQPRRVAATSIAQRVADEMDVVL
GKEVGYTIRFEDVTDKYNTVLKFLTDGMLLREAMHDPLLTRYSAIVLDECHERTLSTDVI
MGLLMEILPKRKKGSEHGELKVVVMSATLDAKKFQEYFHNAPLMKVPGRTFPVDVFYTTK
PERNYVEAAVRTTLHIHQCEEEGDILVFLTGEAEIEQACEEIREKSRSMDSELVVYPLYS
SLPPEAQRKIFSAAPGPRTPGGKPGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVFNP
RIRVESLLVSPIS
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccgccgacgtaataggattgatttgggagaaagcacgagtaagaagaacaag
gaagatataaacgtttggactggaaagcccttttcccagcgttattacgacattttagat
aaacgtacaaaactaccagtttaccaattcaaggatgagttgattaaaaaaatattagag
aaccaatccattgtcgttgaaggagagacgggtagtggaaagacgacacaaataccacaa
ttcttactggaggcaggtttggccgatcaaggaaagacatgtgttgcatgtacgcaacct
cgtcgagtcgcagcgactagtattgcgcagcgtgttgccgatgagatggacgttgtattg
ggtaaagaagtaggatataccatccgttttgaggatgttaccgataaatataatactgtt
ctgaaatttctgaccgatggtatgttgttgcgagaggctatgcacgatccattattgacg
agatacagtgcgattgtccttgatgagtgtcatgaacgtactctgtctaccgatgtcatt
atgggcctattgatggagattttgcctaaaaggaaaaagggttcagaacacggagaattg
aaggtcgtagtaatgagtgccacattagacgctaagaagtttcaagaatactttcataac
gccccattaatgaaagtaccgggaagaacatttcctgtcgatgtcttctacacgaccaaa
ccggagcgaaattatgtagaagctgcagtacgtactactctacacatacaccaatgcgag
gaagaaggtgatatcttagtcttcttaacgggagaggcagagatcgagcaagcatgcgaa
gaaattcgggaaaagtctcgttctatggattctgagctggtagtctaccctttatattca
tcgctgccaccagaagcgcaacggaaaatatttagcgcagctcccggcccacgcactcct
gggggtaaacccggacggaaggtagtcgtgtcgacgaatgttgctgagacaagtttgacc
atcgatgggattgtttatgttgtagatccaggattctcgaaacaaaaagttttcaaccca
cgtattcgcgttgagtcattattagtttcacccatatct
DBGET
integrated database retrieval system
