Fragilariopsis cylindrus: FRACYDRAFT_190862
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Entry
FRACYDRAFT_190862 CDS
T04784
Name
(GenBank) Vps16_N-domain-containing protein
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
FRACYDRAFT_190862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fcy04131
]
FRACYDRAFT_190862
Membrane trafficking [BR:
fcy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
FRACYDRAFT_190862
Hops complex
FRACYDRAFT_190862
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
Beta-prop_EML_2
Phage_tail_C
Motif
Other DBs
NCBI-ProteinID:
OEU13100
JGI:
190862
UniProt:
A0A1E7F4M2
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MSDEAGNIIGAPVEASWQYLGDLPYRRVPVYSNVRWGGDNVGTREGQPGLTSDTLNYGLS
AFPKASLQRHPDLLDARELRELLNTSTVTKVVGCQYGGPIAAVTLPIVGETSWFSHTEIR
ILSNSGRPLATIDFPLSGIERKYSPADIMEIGFTDRTALVIVLKDSLCLTYDLTGEVLLP
PFFILPRGDGQGTDLFQACIFEGGAAVLSTAKHSAIVEFLDDHDDPMYFNTAHLGARKVL
PPSYISADFGGVGLNDSMPPFCGLVTFLPTATFASANFLSYSAIVVLSRTKTASRHPEVF
LSTNDNSVVVVDVATTEMKDLDCRARISSPIVEMTFAPNGRFLACYSENSMLTVISSTFE
TKVLDFDTSEGSTQPPLEIRWCGEDSVILHWKNLGVLMVGPYGDWLRFPYENHGNLYLIP
EIDCCRVISDTSVEMLQRVPPATALLLRIGSIEPAAMLLDASDAFDNGSTSSDEAARAIT
KTGMILEAIEGCADAAAKEFDIATQKRLLSAASYGMHFTFKNSKGSRNIMGGNVHEDPED
ESISTMPSRTTLKFVEIGKKLRILNALRNPSVGVVLTSAQYDAITPVGVIARLIAVKKPA
LATSISKYLHLPKSVQLYTRASKATAFITSAKNRSDADIAEGAIRIITEEKSGTKDASKY
TSSIINRGGYATVAMASTKAGRPGVASLLLLLETSVADKVPALLSIGSYVDAVAVATSAR
DSDFIFYTTMEYRKHCMAQYQDPVKGNQAFMTTVVTKFSQESYNALRRYTSTMSDVRNEI
SLQIRRQKFVDAGITLAVRALDGKTESRGKQAILSEASKIFGMGKDSAFHKSCTDEYIEL
IKDQEILRTKYSAGEVAPESSSVVATIYSILRYAGKNERDKNRLLNDAEKVAKKFRIPEK
MMWHTKVKAFSQTDQWDNLRLLANSRTKSPIGYKPFARAAIKGRRPIVEILRYIDRITVP
EERFSLYGEGSLWKRALEEAVKMKDARRIIDVKARCNDPEIQLAADQMLGRLA
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggcgggaaatatcattggagcgccagttgaagctagttggcagtatctc
ggagatcttccgtaccgtcgagttccggtttactccaatgttcggtggggaggagacaat
gtcggaacccgtgaaggtcagccgggattaacgtcagatacattaaattatggcttatcg
gcatttccaaaggcatccctgcaacgtcatccagacttgttagatgcacgagagctacga
gaacttttgaacacatcaacagtaacaaaagttgtgggatgtcaatatggtggaccaatt
gcagccgttactttgcctattgtgggggaaacatcctggtttagtcatacagaaattcga
atcttgtcgaattcaggccgaccattggctactattgactttcctctttctgggatcgaa
cgcaaatactcgcctgcggatattatggagattggatttacagatcgaaccgccttagtt
atcgtcctgaaggactcactctgtttgacgtatgacttaacaggtgaagttcttttgcca
cccttttttatactacctcgtggagatggacaagggaccgacctattccaagcttgtata
tttgaaggtggtgcggccgttctttcgacggccaaacattcagccatcgtagaattccta
gatgatcacgatgaccccatgtactttaatacagcacatttgggagcgcgaaaggttcta
ccaccatcatacatatcggcagactttggaggtgttggattgaatgattccatgccgcca
ttttgtggcttagttacctttttgccaactgcaacctttgccagtgctaacttcctttcc
tattcagcgattgtggttctttcccgcaccaaaactgcatcacgtcatcctgaggtcttt
ctttccaccaatgacaattcagtcgtcgtcgtcgatgtcgccacaacggaaatgaaagac
ctcgattgtcgagctagaatatcttcccccatagtagaaatgactttcgctcctaatggc
agattcctagcatgttactcagaaaattctatgttaactgttatatcatcaacattcgaa
acgaaagtattagattttgacacatcggaaggttctacacagcctcctctcgaaatacga
tggtgtggagaagatagtgtaatattacactggaaaaatttaggtgtgctaatggtaggc
ccatacggagactggttacgattcccctacgaaaaccatggtaatctttatttgattcca
gaaatagactgctgtcgcgtaatttcagatacgtcagttgaaatgctgcaaagagtaccc
ccagcgacagctcttctattacgaattggttcgatcgagccagctgccatgctattggac
gcatctgatgccttcgataacggatctacctcctcggacgaagccgcccgtgctattact
aaaaccggtatgattttagaagccatcgagggatgtgccgatgctgccgccaaggaattc
gatatagcgactcaaaaacgtcttcttagtgctgcatcatatggaatgcactttacgttc
aaaaactcaaagggaagtagaaatataatgggtggaaacgtgcacgaggatccggaagat
gaatcgatttcaactatgccatcacggacgacgctaaagtttgtcgaaataggcaaaaag
cttcggattttgaatgctctccggaatccatccgttggtgttgtcctcacctctgctcaa
tatgatgccattacacctgttggcgtaattgctcgtttgattgcagtaaaaaagcctgca
ctggcaacttctattagtaaatatctgcatttacctaagtcagtccagctatacactcgt
gcctccaaggctacggcattcatcacatcggcaaagaaccgttcagatgccgatattgca
gaaggtgctatccggattatcacagaagaaaaaagtggtacaaaagacgcgtctaaatat
acatcatcaattatcaatcgaggaggatatgctaccgttgcgatggcgtctacaaaggct
ggacggcctggtgttgccagtcttttattactactggagacgagtgttgcagacaaggta
ccagcactgctctcgataggctcatacgttgatgctgtggctgttgcaacttccgccaga
gatagcgacttcattttttatactaccatggagtatcgaaaacattgtatggcgcagtat
caggatcctgtaaaaggaaatcaggcttttatgaccacggtggtgacaaaattttcccaa
gaatcgtacaatgcacttcgaagatacacatctacgatgtctgatgtaaggaatgaaatc
agtctacaaatacgacgccaaaaatttgtagatgcaggaattacattagccgtacgagca
ctcgacggtaagaccgaatcacgtggaaagcaagcaatactttcagaggcttctaaaatt
ttcggaatgggaaaagattctgcatttcacaagtcttgtactgacgagtacatcgagttg
atcaaagatcaagagatcctccgcacaaaatacagtgcaggtgaagttgcacctgagtca
tcatcggtagtagcaaccatctattctatcttgcgctacgctggtaaaaatgagagagac
aaaaatcggctactcaacgatgccgaaaaagttgctaaaaagtttcgcataccagagaaa
atgatgtggcacacaaaagtaaaagcattttcccagacggatcaatgggataatcttcga
ttattggcgaattcgcgaacaaaatcacctattggatacaagccattcgcaagggctgcg
attaaggggcgccgacctattgttgagatactgcgttacattgacaggattacggtacca
gaagaaagattcagtttatacggggaaggaagtctttggaagagagcactcgaagaagcg
gtgaaaatgaaagatgcgagacgcattattgacgtgaaggcaagatgtaatgatcccgaa
atccagctggctgcagatcaaatgcttggacgactagcgtga
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