Fragilariopsis cylindrus: FRACYDRAFT_191588
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Entry
FRACYDRAFT_191588 CDS
T04784
Name
(GenBank) putative small nuclear ribonucleo protein Sm D1
KO
K11087
small nuclear ribonucleoprotein D1
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_191588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_191588
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_191588
Spliceosome [BR:
fcy03041
]
Complex A
U1 snRNP components
Sm proteins
FRACYDRAFT_191588
U2 snRNP components
FRACYDRAFT_191588
Complex B
U1 snRNP components
FRACYDRAFT_191588
U4/U6.U5 tri-snRNP components
FRACYDRAFT_191588
Complex C
U2 snRNP components
FRACYDRAFT_191588
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
FRACYDRAFT_191588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
YomU_Tube
EBNA2_Core
BPL_C
Hfq
SM-ATX
Gemin7
DUF2642
Motif
Other DBs
NCBI-ProteinID:
OEU12335
JGI:
191588
UniProt:
A0A1E7F2V4
LinkDB
All DBs
Position
Unknown
AA seq
110 aa
AA seq
DB search
MKLVKFLQKLNREQVTIELKNGTVIQGTVVGVDATMNCHLKKAKVTVRGKNPVSYATLSV
RGSTMRAWLLPESLNLDALLVDDTPKKKTAEPKPMDTGRGRGRGRGRGRR
NT seq
333 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttgttaaatttttgcaaaagctcaatcgagagcaagttacgatcgagttaaag
aatggaaccgttattcaagggacagtggtcggtgtggatgccacaatgaattgccatcta
aaaaaggctaaggtgactgtgcgtggaaaaaatcctgtctcatatgcaacgctttcggta
agaggatccacgatgagagcttggttactaccagaaagtctgaacttagatgcgctacta
gttgatgatactccgaagaagaagacagcggaaccaaaaccaatggacacaggaagagga
cggggaagagggcgaggacgaggccgtcgataa
DBGET
integrated database retrieval system
