KEGG   Fragilariopsis cylindrus: FRACYDRAFT_194234
Entry
FRACYDRAFT_194234 CDS       T04784                                 
Name
(GenBank) WD40 repeat-like protein
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
fcy  Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_194234
Spliceosome [BR:fcy03041]
 Complex B
  Other components
   Complex B specific factors
    FRACYDRAFT_194234
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 WDR55 Beta-prop_TEP1_2nd Beta-prop_TEP1_C LisH_TPL WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_LRRK2 Beta-prop_SPT8 Beta-prop_CAF1B_HIR1 NBCH_WD40 LisH LisH_PAC1 Beta-prop_IP5PC_F WDR54 Beta-prop_Vps41 LisH_WDR26
Other DBs
NCBI-ProteinID: OEU10153
JGI: 194234
UniProt: A0A1E7EXA7
LinkDB
Position
Unknown
AA seq 533 aa
MEGEFSIEAGDVLCLIMGFLTSQGLHESARILRKESGIGFTNGVIQKGLVASSIRRGEWG
SAVEEKGKKKRRSKSKSLSSSSTRLTKARSLEQKLAEIAANPNKFSNTETRQMILFPQRS
KQQRREDLALNVEDQREIPLNRLPTLIQQAMKWQSYTGQLPWIKEVYENVADVDVDNKKK
RRKRKSNDYDGVDEIPQDTMSKVKFGKNAVCESAIFFSRGLITGSSDSLIEIWDAGCSYE
DLNTKDYPYQKENVMGHTDASVLCMAISNDNEILVSGDSVGKVKIWKLSTGSCLRQYQAH
DTSVTALSLSRDASRVLTGCKSGLCREFGIVTQNLLQVYEGHTSYIHACHYALDWKLNGD
NNAQTSATEGWVVTSSADGTVRVWNKGKMFSMVVDPTQVMAECPAIHSLLVVPGEESRML
MIPRAFTAFLVNLEGTVLQVYNAESSESVFLAASLTVSVVYLASSTGDCLVFSLQTGKLL
QTIHNFALDSTSKTNEHRTAEISALIHHPYKPSILAAYSNDKTQKKGVLTVWK
NT seq 1602 nt   +upstreamnt  +downstreamnt
atggaaggcgagttctcgattgaagctggtgacgtcttgtgcttaatcatgggtttttta
acctcacagggacttcacgaatctgcgaggattcttcgaaaggaatcagggattggattc
actaacggagtaatccagaaaggattagttgcttcatcgatacgtcggggagaatggggt
tccgccgtcgaggaaaaagggaaaaagaaacgacgatcaaaatcgaaatcattgtcgtcg
tctagcacccgtctgacaaaggcgaggtctttggaacaaaaattagcagaaattgcagca
aatccgaataaattttcaaataccgaaacaagacaaatgatattatttcctcaacgatcc
aaacagcaacgccgagaggacttggcactaaatgtagaagatcaacgtgaaatccctttg
aaccgattgccgaccttgattcagcaggccatgaaatggcaaagttatactggtcagctg
ccttggattaaagaagtatacgaaaacgtcgccgacgtcgatgttgacaataaaaagaaa
cgacgcaaacgcaagagtaatgattatgatggagtagatgagattcctcaagacaccatg
tccaaggtaaaatttggaaaaaatgctgtctgcgagtccgcgatcttcttttctcgcgga
ctaataacaggctcatcagattcactaatagaaatatgggatgcaggatgctcttatgag
gacttgaacacgaaggattatccctatcagaaagaaaatgtaatgggtcacacagacgca
tcagtactttgtatggcgattagcaacgataacgaaatccttgtttctggtgattctgtt
ggcaaagttaagatatggaagctttccactggctcatgcctaaggcaatatcaagcccat
gatacatctgtaacagctttgtcgctatcgagagatgcttctcgagtcttgacagggtgt
aaaagtggattgtgtcgggagtttggaattgtgacacaaaatttattgcaagtgtacgag
ggacacacgtcgtacattcacgcatgtcattatgctttagattggaagttaaatggtgac
aacaatgcacaaacgtcggcgacagaaggatgggtcgtaacatcgtctgcagatggaacg
gttcgagtgtggaataaaggaaagatgttttcgatggtggtcgatccaacccaagttatg
gcagaatgcccggccattcacagcttattggtagtccccggtgaggaaagtcgaatgtta
atgattccacgagctttcacggccttccttgtaaacttggagggtaccgtcctacaagta
tataatgcagaaagctccgaatctgtgtttttggctgcttcactcaccgtgtccgtggtc
tatcttgcatcttcaacgggagactgcttagtcttttctttgcagacgggaaagcttcta
caaaccatccataattttgcactagatagtacttcgaaaacaaatgaacatcgaacggca
gagatttcagctttgatccatcacccttacaaaccatctattttagctgcatattcgaac
gacaagacacagaagaaaggggtgttgacagtatggaaataa

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