Fragilariopsis cylindrus: FRACYDRAFT_195229
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Entry
FRACYDRAFT_195229 CDS
T04784
Name
(GenBank) Metallo-hydrolase/oxidoreductase
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FRACYDRAFT_195229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcy03021
]
FRACYDRAFT_195229
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_195229
Transcription machinery [BR:
fcy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
FRACYDRAFT_195229
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
FRACYDRAFT_195229
U7-dependent histone pre-mRNA processing factors
FRACYDRAFT_195229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-ProteinID:
OEU09363
JGI:
195229
UniProt:
A0A1E7EV02
LinkDB
All DBs
Position
Unknown
AA seq
737 aa
AA seq
DB search
MEDVMRITPLGSGQEVGRSCHLVQFCDMTIMLDIGIHPGYDGINGLPYLDQVEPDQIDVL
LVTHFHLDHAASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYYRLLQMKNAKAEDVLWN
DTDLAACMDKIELIDFHTTVTVGGLSFHALNAGHVLGACMFWLDIGGRTLLYTGDYSMED
DRHLMAAELPEKKPDVLMCEATYGVQVHASRAEREARFTGAIERVVSRGGRCLIPVFALG
RAQELLLILDEYWQSNPHLQNIPIWYASKLASRALRVYQTYANMMNARIRSQMDVSNPFN
FNYIQNLKSIDVNNFSDSGPCVVFASPGMLQSGVSRQLFDRWASDPKNGVLIAGYAVEHT
LAKEIMNQPTEVVTLEGRRQPMNCLVDYVSFSAHVDFVQNRSFITQVDPKHIILVHGQKD
EMGRLKSALLLQYRKLPENKRPTITMPPNLQTVSLKFARRRSAKVMGSLALRESEPVEGE
KVQGVLVTHNFTSKIVKPDDLATYTPLRVGSISSKLHVPFTGSIETLRLFLSEMFSGLTE
TQIVEGGKDGQKTCHKFSCHQDKVSVYVGKTERVAIVEWDASPAGDVIADALIALIMHAQ
SSAASIRLSSKPCRHPRAGNIDEDDNGEEEGSSAKKPRTSLTDNRLRLIKDTLKDQFDRV
EAVYEGNTASYEITTDTGVDSGVVLEEELLTCTVNVSFPDDSGGIAEIKVECLDQKLASN
VQECLRNLTKATSPLEN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtaatgagaataaccccattgggttcagggcaggaggttggacgatcatgt
catttagtacaattttgtgatatgacaattatgttagatattggtatacatccaggatat
gatggtattaatggattaccatatttagatcaagtggaaccagatcaaattgatgtatta
ttagtgacacattttcatttagatcatgcagcatcattgccatatctaacagaacgtaca
tcattcaagggacggatttttatgacacatccaactaaagctgttacacgattattactt
ggtgattattatcgattattacaaatgaaaaatgccaaggcagaagacgtcttatggaat
gatacggatctggcagcatgtatggataaaattgaactaattgatttccatacaactgtt
acagttggtgggttaagttttcatgcattaaatgctggtcatgtattaggtgcttgtatg
ttttggttagatattggtggacgaacattattatatacaggagattatagtatggaagat
gatcggcatttaatggcagcagaattaccagaaaagaaaccagatgtattaatgtgtgag
gcaacatacggtgtacaagtccatgcaagtcgtgcggaacgtgaggcacgatttacagga
gcaattgaacgtgtcgtatctcgtggtggacgatgcttgataccagtctttgccttggga
cgtgcacaggaattattattgattttagatgaatattggcaatctaatccacatttacaa
aacatacctatctggtatgcaagtaaacttgccagtagagcattacgagtatatcaaacc
tacgcgaacatgatgaatgcaaggatacgatcacaaatggatgttagtaatccatttaat
tttaattatatccaaaatttgaaatcaattgatgttaataactttagtgattcgggacca
tgtgttgtatttgcatcaccggggatgttacaaagtggtgtgtcacgacaattatttgat
cggtgggcatcggatcctaaaaatggtgtattgattgctgggtatgccgtcgaacataca
ttagcaaaggaaattatgaaccaaccaacggaggttgttacattagaaggacgacgtcaa
ccaatgaattgtcttgtggactacgttagtttttcggctcatgtagactttgtgcagaac
agaagttttatcacgcaagtcgatccgaaacatatcattcttgttcatggacagaaagat
gaaatgggtagactcaaaagtgctctattactacaatatagaaaacttccagagaataaa
agaccaactattacaatgccaccaaatctacaaaccgtgtcgctaaaattcgcacgtcga
cgttcggcaaaggtaatggggtcattagccttaagggagtcggaaccagtggaaggtgaa
aaagttcagggggtgcttgttactcataatttcactagtaagattgttaaacctgacgac
ttagctacgtatactcctctacgagtaggatcaatttcctcgaaactgcacgttccattt
acaggttcgattgaaacactccgtttatttctatctgagatgttttcaggattgaccgag
actcagattgttgagggcggtaaagatgggcagaagacatgtcacaagttcagctgtcat
caagacaaggtaagtgtttatgtaggaaaaactgaaagagtggccattgtagagtgggat
gcaagtccagctggagacgtcattgctgatgcattaatcgctctgattatgcatgcgcaa
agcagtgcagcatcaatccgcctgagcagcaaaccctgtcgacatccccgagcaggcaat
attgatgaagatgacaatggagaagaagagggatcatcggctaaaaaacctcgtacaagt
ttgacggataatagattgcgactaatcaaagatactttgaaggatcaattcgaccgcgtt
gaagctgtatacgaaggaaataccgcatcatacgagattacaactgatactggcgttgac
tctggagtcgtcctagaagaagaactactcacttgtacagtcaatgtttcctttcctgat
gattccggagggattgccgaaattaaagtcgaatgtttagatcaaaaattagcttcaaat
gtgcaggaatgtctcagaaatttaacaaaagccacgtctcctctcgaaaactaa
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