Fragilariopsis cylindrus: FRACYDRAFT_196471
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Entry
FRACYDRAFT_196471 CDS
T04784
Symbol
Rfc4a
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K10755
replication factor C subunit 2/4
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03030
DNA replication
fcy03410
Base excision repair
fcy03420
Nucleotide excision repair
fcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRACYDRAFT_196471 (Rfc4a)
03410 Base excision repair
FRACYDRAFT_196471 (Rfc4a)
03420 Nucleotide excision repair
FRACYDRAFT_196471 (Rfc4a)
03430 Mismatch repair
FRACYDRAFT_196471 (Rfc4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_196471 (Rfc4a)
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_196471 (Rfc4a)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_196471 (Rfc4a)
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
FRACYDRAFT_196471 (Rfc4a)
DNA Replication Termination Factors
ELG1-RFC complex
FRACYDRAFT_196471 (Rfc4a)
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
FRACYDRAFT_196471 (Rfc4a)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
FRACYDRAFT_196471 (Rfc4a)
Check point factors
HRAD17(Rad24)-RFC complex
FRACYDRAFT_196471 (Rfc4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_16
Rad17
AAA_22
RuvB_N
ResIII
AAA_5
AAA_30
nSTAND3
AAA_24
Mg_chelatase
SLFN-g3_helicase
AAA_assoc_2
AAA_14
AAA_11
AAA_2
ATPase_2
DUF6895
AAA_19
AAA_25
AAA_18
MeaB
RNA_helicase
NPHP3_N
AAA_33
TIP49
ABC_tran
DUF815
AAA_28
RCF1-5-like_lid
NACHT
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
OEU08411
JGI:
196471
UniProt:
A0A1E7ER60
LinkDB
All DBs
Position
Unknown
AA seq
351 aa
AA seq
DB search
MSSSDGTPWVERYRPQTLDDVSHQTEVVATLKNAVETGRLPHLLLYGPPGSGKTSVALAL
CKDLWHPSQWRRRVLELNASDERGISVVREKIKQFASLSVGTADDTKKYPNPPFKVIILD
EADTVTKDAQAALRRIIEAHSRITRFILVCNYVTRIIEPLASRCAKFRFMALPPATMKER
VTAIAEAEGRKNNVIMEESQIDAVLAVSGGDMRRAVTSLQSVQALLAGQSEDNSKNNIID
EAAINELAGLPPDHVIDTLYESLLSNRFNTMQSAVQNVIADGYSVQTLLQKLLDKFIVTD
DLDELGRAKLAIRIAEAEDRMNDGADEYLQLMTVCGLALKCLYTASKKMKQ
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctgacgggaccccgtgggtagaacgttatcgtcctcaaacccttgatgat
gtatctcatcaaacggaagttgttgcaactttgaaaaatgctgtcgagactggtcgacta
ccacatttattattatatggaccacctggtagtggtaaaacaagtgtcgcattagcatta
tgtaaagatttgtggcatccatcacaatggcgccgtcgtgtacttgaattgaatgcctca
gacgaacgtgggattagtgtcgtaagagaaaaaattaaacaattcgctagtttatctgtg
gggacagctgatgatacgaaaaaatatcctaatcctccattcaaggtgattatcttagat
gaagccgataccgtgacgaaggatgcacaggcagctcttcgacgaattatcgaagcacat
tcacgtattacacgtttcattttggtttgtaattacgtaacacggataattgaaccatta
gcatcacgatgtgcaaaattccgattcatggcattacctcctgctactatgaaggaacgt
gttactgctattgctgaagcggaaggacgtaaaaataatgtaattatggaagaaagtcaa
atcgatgccgtattagcagtttcggggggagatatgagacgtgccgttacatccttgcaa
tccgtccaagcattattggcaggacaatcggaagataatagtaaaaataatatcatcgat
gaggctgccattaatgaattagctggactaccacctgatcatgttattgatacactgtac
gaatcattgctatcgaataggttcaatacgatgcaatcggctgtacagaatgttatcgct
gatggatattccgttcaaactttactacaaaaacttcttgataaattcattgtaacggat
gatttagacgaattgggtcgggctaaattagcgatccgtattgcagaagctgaggatcga
atgaatgatggtgctgatgaataccttcaacttatgactgtttgtggactggcactgaaa
tgtttatatactgctagtaaaaagatgaaacaataa
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