Fragilariopsis cylindrus: FRACYDRAFT_196780
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Entry
FRACYDRAFT_196780 CDS
T04784
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_196780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_196780
03012 Translation factors [BR:
fcy03012
]
FRACYDRAFT_196780
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FRACYDRAFT_196780
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
FRACYDRAFT_196780
Translation factors [BR:
fcy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
FRACYDRAFT_196780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
HA2_N
AAA_16
AAA_19
AAA_22
nSTAND3
AAA_23
Motif
Other DBs
NCBI-ProteinID:
OEU08328
JGI:
196780
UniProt:
A0A1E7EQS9
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MKQQDRKKEYEQVLKNRSKLPAYERQAEIVATVGANPVTIIKGETGCGKSTQCPQFLLDA
LPGANIACTQPRRISAISIAERVAQEQCLMASSSSSSSSQKQQGRGEKDGVGTLVGYQVR
LESASSKDTQLMFLTPGILLRKLQSSPMLTEYTHIIIDEVHERDKYTEFLLIRLRDLLPL
RPDLRVVLMSATLQTDVLINYFSPSANDNNSDFYRDHPPAMLSIEGRTFPVQEFFLEHAL
ELTQYIEVYDDDDGDHPTAENQVNLTRKQEKYLELYATMYNDEDINTELLLEILHYILKT
SHGEGAILVFLPGWMEISEVNMLLENTVPFNNPSKFLVLPLHSGIPSQDQRRVLRRPPPG
VRKIVLSTNIAETSLTIEDVAFVVDTGRAKEKDYDPHLKTSTLQPVWVSQSSAKQRKGRA
GRTKAGVCFHMFSSRRHQAMRPFVESELLRTPLEEMALMTKKLGLAPGGPDDEDGIPAFL
AKAITPPHAKSISNALELLVDLGAMLQETNDLTTLGECLSVLSLEPRVGKMVIWSYLLGC
TKVASQMAVAMSYKSPFALPPPHMRRDAEYSKLALSNDSESDQVTVLNAILKRDQLKKRS
EGAYRDWCRRNFISPSSLQMIGDLRKNIGRELSSLGFVDPTTNGYHNRHDKEHALWGAAI
AAGLYPNV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacaggatcgaaagaaggaatacgagcaggtactgaaaaatcgatcgaagtta
cctgcttatgaacgtcaagcagagattgtggccaccgtcggagcgaatccggtcaccatt
atcaagggagaaacgggatgcggaaaaagtacacaatgtcctcagttcctgttagatgct
ttacccggtgcaaatattgcatgtacgcagcctcgtcgtatttcagccataagtatcgca
gaaagagtagcccaagagcaatgcttgatggcatcgtcctcatcatcatcatcatctcaa
aaacaacaagggcgaggagaaaaggacggagttggtaccttagtcggttatcaggtccgg
ctcgaatcggctagtagcaaagatacacagcttatgtttctgacgccgggaatactcttg
cgaaaactacagtcctctcctatgctgacggagtacacgcacattatcatcgatgaagtt
catgaacgagacaagtacacggaattcttattgatacgattgagagatttgttacctctt
agacctgatttaagagtagtattgatgagcgctacattgcaaactgatgtattgataaat
tacttttctccttccgccaatgataacaatagcgacttttatcgggatcatcctcccgcc
atgttaagcattgaaggtaggacgtttccggtccaagaatttttccttgagcacgcactt
gagttgacgcaatacatcgaagtttatgatgacgacgatggcgatcatcctactgctgaa
aaccaagttaacttgacgcgtaagcaggaaaagtatttggaattatatgcaacgatgtac
aacgacgaggacatcaataccgaacttctgttggagattcttcactatattctaaagacc
tctcatggtgaaggagctattcttgtctttttgcccggctggatggaaatttctgaagtc
aacatgttgctggaaaatacagtgccattcaataacccttctaagttcttagtgctgccc
ctacactctggaatcccgagtcaagatcagcgacgtgtattgcgaagaccacctcccggt
gtacggaaaattgtactgagcacaaacattgccgaaacatcgctcaccattgaagatgta
gcttttgtcgttgacacaggaagagcgaaagaaaaagactacgaccctcatctgaagaca
tcgactcttcaaccagtgtgggtcagtcaatcgtctgccaaacagcgaaaaggtcgagca
ggaaggacgaaagcaggagtatgctttcatatgttctccagtagacgtcaccaagcaatg
cgtccattcgttgaaagcgagctccttcgaactccacttgaagaaatggcccttatgaca
aagaaactaggcttagcaccgggcggtcccgatgatgaagacggaatcccggcatttctg
gcgaaagcaattacaccccctcacgccaagtcaataagtaatgctcttgagctactagtt
gacttgggggctatgctccaagaaacgaatgacttaactacccttggagaatgcttatcc
gtgctgagtttagagcctcgtgtaggaaagatggttatatggtcgtatctattaggttgt
acgaaagtggcatcacagatggcagtggcaatgtcctacaagagtccgtttgctttacct
ccaccgcacatgcgacgtgatgcagagtactcgaaattagcgttaagtaacgacagcgaa
agtgaccaagtgacagttttgaatgctatattaaagcgtgatcaactaaagaaaaggtca
gaaggtgcttacagggattggtgtcgacgaaatttcatcagcccatctagcttacagatg
attggcgatctgagaaaaaatattggtcgtgaattgtcatcactaggttttgttgatccg
acgaccaatggttatcacaatcgtcacgataaggagcatgcattatggggagcagcgatt
gctgccggtttgtacccgaatgtt
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