KEGG   Fragilariopsis cylindrus: FRACYDRAFT_205486
Entry
FRACYDRAFT_205486 CDS       T04784                                 
Name
(GenBank) WD40 repeat-like protein
  KO
K15542  polyadenylation factor subunit 2
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    FRACYDRAFT_205486
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_205486
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     FRACYDRAFT_205486
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_Aladin WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd ASA1 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_TEP1_C CFAP251_N WDR90_beta-prop_4th Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N eIF2A Beta-prop_DCAF4 WD40_MABP1-WDR62_1st KH_1 Beta-prop_WDR41 Tricorn_2nd Beta-prop_HPS5 Beta-prop_SPT8 NBCH_WD40 WD_LRWD1 PEP5_VPS11_N Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_RIG_1st WD40_RFWD3 KH_KhpA-B Beta-prop_NUP159_NUP214 PAC11
Other DBs
NCBI-ProteinID: OEU22813
JGI: 205486
UniProt: A0A1E7FYB8
LinkDB
Position
Unknown
AA seq 413 aa
MPISTVSDTNPSTAFVTYLAHVTRAKNSTPIMCLSWTPGGRRLLTGNQEGEFTLWDGITF
GFELIMSAHDVSFRSMAWSHNRNYLLTSDAGGNIKYWSPSIAPVQSIDSHNGQSIHGLSF
SPSDTKFVSCGDDSKLRIWDWATASEEKTLEGHGWDVKSVQWHPRSSVIASGSKDNLVKL
WDPRSGGCLSTLYGHKNTVTRVAWNNNGNWLVTASRDQLIKLYDIRTMKELASLKGHHKE
VTSIAWHPLHESVLASGAMDGTILFWNLGAKGSEEPAARVPYAHDMAVWSLEWHPAGHML
ASGSNDRQTKFWARNRLGSTAGLQDASEDKDEENHTAEIELGNHVGIVIGRRGATIISMQ
RSTGCKMYVDQVRRVLLIQGTEKQIDTVQKRVGALLDRVSNEEGRDHHGMAIS
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgcccatttctaccgtatctgatacgaacccgtcaactgccttcgtaacttatttggct
cacgtgacgcgtgcaaagaattctactcccatcatgtgcctaagttggacgcctggaggt
agacgattattgacgggaaatcaagaaggagaattcactctatgggatggtatcacattc
ggcttcgaattaataatgagtgcccacgatgtaagctttcggagcatggcatggagtcat
aatcgcaattatttgttaacgagtgacgcgggtggcaacatcaaatattggtcgccctct
atcgcaccagtccaatctatcgactctcacaatggacaatcaatccacggattaagtttt
tcacccagcgacacaaaattcgtctcgtgcggagacgactcgaaacttcgaatttgggat
tgggcaacggcttctgaggagaaaactttagagggacacggatgggacgtcaaatcggtt
caatggcatccccgttcgagtgtcatagccagtggtagtaaggacaatttggttaaattg
tgggaccctcgttcgggtggatgtctatcgaccttgtatgggcacaagaacactgttaca
cgggtggcatggaataacaacgggaactggttagttacagcaagcagagaccaactcatt
aagctatatgacattcgtaccatgaaagaactagccagtcttaagggtcaccataaggaa
gttactagtatcgcatggcatcccttacatgaaagcgtattagcatcaggtgcgatggat
gggacgattctattttggaatttaggcgccaagggaagtgaggaaccagccgctcgagtt
ccatacgcacacgatatggctgtgtggagtttagaatggcatccggctggacacatgctc
gccagcggctcaaatgatagacaaacaaagttttgggcacgaaatcgattgggcagcacc
gctggattgcaagatgcatctgaagataaggatgaagagaatcatactgcagaaattgaa
ttgggcaaccacgtgggtatcgtcattggacgaaggggagcaacgattattagcatgcaa
cgatcgactggatgtaaaatgtatgttgaccaagtccgaagggtcttgttaatacagggc
acagaaaagcaaatcgataccgtgcagaaacgtgtgggggcgttgttagatcgagtttcg
aatgaagaaggacgagatcatcatggaatggctatatcatag

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