KEGG   Fragilariopsis cylindrus: FRACYDRAFT_206746
Entry
FRACYDRAFT_206746 CDS       T04784                                 
Symbol
FEN-1
Name
(GenBank) PIN domain-like protein
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03030  DNA replication
fcy03410  Base excision repair
fcy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FRACYDRAFT_206746 (FEN-1)
   03410 Base excision repair
    FRACYDRAFT_206746 (FEN-1)
   03450 Non-homologous end-joining
    FRACYDRAFT_206746 (FEN-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fcy03032]
    FRACYDRAFT_206746 (FEN-1)
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_206746 (FEN-1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fcy04147]
    FRACYDRAFT_206746 (FEN-1)
DNA replication proteins [BR:fcy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FRACYDRAFT_206746 (FEN-1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FRACYDRAFT_206746 (FEN-1)
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FRACYDRAFT_206746 (FEN-1)
Exosome [BR:fcy04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   FRACYDRAFT_206746 (FEN-1)
SSDB
Motif
Pfam: XPG_N XPG_I 5_3_exonuc XRN_N 5_3_exonuc_N HHH_5 HHH_8
Other DBs
NCBI-ProteinID: OEU20030
JGI: 206746
UniProt: A0A1E7FPD9
LinkDB
Position
Unknown
AA seq 386 aa
MGIKGLAKLLSDEAPDCIREVEFKSLHGRKVAIDASMAIYQFLIAVRSGGPNQQAMMLTN
ADGETTSHIQGMFNRTIRFLTEGMKPVFVFDGKAPQMKSGELEKRREKRKKAEEELKKAA
DDDNVEEMDKHSKRLARAGRKENEDCKKLLRLMGVPVVVAPMEAEAQAAALCKAGLVYAT
GTEDMDALTFATPILIRKMTFANQAAKGAKIQQMNYKKAVEGLELTHEQFVDLCILMGCD
YCDTIKGIGPKTALKLIKEHGSIEKIIPALQDEKPVPAYVLARELFFNHEVDTDVELKWT
APKKEELTKFLVEEAGFNADRVKASIEKLDKAHTANRKPQARMDSFFAVKSNPAADAKRK
KKLQDDKAKKKQKVSDDRKKKVKGKK
NT seq 1161 nt   +upstreamnt  +downstreamnt
atgggaatcaaagggcttgctaaactgctctcagacgaagctcctgattgtattcgagag
gttgaattcaaatcacttcatggacggaaagttgctatcgatgcatcgatggcaatatat
cagtttctgatcgctgtacgatcaggagggcctaatcaacaggctatgatgttgacgaat
gctgatggcgaaacaacgtctcatatccaggggatgtttaatcgtacaattcgattctta
acagaaggtatgaaacctgtttttgtctttgatgggaaggcaccacaaatgaaatcaggt
gaattagaaaagcgacgagaaaaacgtaaaaaggcagaagaggaattgaaaaaagctgcc
gacgatgataacgtagaagagatggacaaacattcgaaacggttagcacgtgctggacgg
aaagaaaatgaagattgtaagaaattacttcgtttgatgggtgtaccagttgttgttgca
cccatggaggcagaagctcaagcggctgcactttgtaaggctggtttagtgtatgcaacc
ggtacggaagatatggacgcgttaacattcgcaacgccgatcctgattcgtaaaatgacg
tttgcgaatcaagcggcgaaaggtgcaaagattcaacagatgaattataagaaagcggtg
gaaggattagaattaactcacgaacagtttgttgatttatgcatccttatgggatgtgac
tattgtgatacaatcaaaggaatcggccctaaaactgctcttaaattgattaaggaacat
ggaagtattgaaaagattataccagctttacaagatgagaaacccgttcccgcatacgtc
ttagcaagggaattattttttaaccacgaggttgacacggatgtggaactcaaatggaca
gcacccaaaaaggaagaattgactaagttccttgtggaagaggcaggctttaacgccgac
cgtgtcaaggcgtccatcgaaaaacttgacaaggcgcacactgcaaatcgcaaacctcaa
gctagaatggattccttctttgcagtcaaatcaaatccagccgctgacgcaaaacgtaaa
aagaaattacaagacgataaggccaaaaaaaagcaaaaggtaagtgatgatcgtaagaaa
aaggtcaagggtaagaaatag

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