Fragilariopsis cylindrus: FRACYDRAFT_206746
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Entry
FRACYDRAFT_206746 CDS
T04784
Symbol
FEN-1
Name
(GenBank) PIN domain-like protein
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03030
DNA replication
fcy03410
Base excision repair
fcy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRACYDRAFT_206746 (FEN-1)
03410 Base excision repair
FRACYDRAFT_206746 (FEN-1)
03450 Non-homologous end-joining
FRACYDRAFT_206746 (FEN-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_206746 (FEN-1)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_206746 (FEN-1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fcy04147
]
FRACYDRAFT_206746 (FEN-1)
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
FRACYDRAFT_206746 (FEN-1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
FRACYDRAFT_206746 (FEN-1)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
FRACYDRAFT_206746 (FEN-1)
Exosome [BR:
fcy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
FRACYDRAFT_206746 (FEN-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XPG_N
XPG_I
5_3_exonuc
XRN_N
5_3_exonuc_N
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
OEU20030
JGI:
206746
UniProt:
A0A1E7FPD9
LinkDB
All DBs
Position
Unknown
AA seq
386 aa
AA seq
DB search
MGIKGLAKLLSDEAPDCIREVEFKSLHGRKVAIDASMAIYQFLIAVRSGGPNQQAMMLTN
ADGETTSHIQGMFNRTIRFLTEGMKPVFVFDGKAPQMKSGELEKRREKRKKAEEELKKAA
DDDNVEEMDKHSKRLARAGRKENEDCKKLLRLMGVPVVVAPMEAEAQAAALCKAGLVYAT
GTEDMDALTFATPILIRKMTFANQAAKGAKIQQMNYKKAVEGLELTHEQFVDLCILMGCD
YCDTIKGIGPKTALKLIKEHGSIEKIIPALQDEKPVPAYVLARELFFNHEVDTDVELKWT
APKKEELTKFLVEEAGFNADRVKASIEKLDKAHTANRKPQARMDSFFAVKSNPAADAKRK
KKLQDDKAKKKQKVSDDRKKKVKGKK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcaaagggcttgctaaactgctctcagacgaagctcctgattgtattcgagag
gttgaattcaaatcacttcatggacggaaagttgctatcgatgcatcgatggcaatatat
cagtttctgatcgctgtacgatcaggagggcctaatcaacaggctatgatgttgacgaat
gctgatggcgaaacaacgtctcatatccaggggatgtttaatcgtacaattcgattctta
acagaaggtatgaaacctgtttttgtctttgatgggaaggcaccacaaatgaaatcaggt
gaattagaaaagcgacgagaaaaacgtaaaaaggcagaagaggaattgaaaaaagctgcc
gacgatgataacgtagaagagatggacaaacattcgaaacggttagcacgtgctggacgg
aaagaaaatgaagattgtaagaaattacttcgtttgatgggtgtaccagttgttgttgca
cccatggaggcagaagctcaagcggctgcactttgtaaggctggtttagtgtatgcaacc
ggtacggaagatatggacgcgttaacattcgcaacgccgatcctgattcgtaaaatgacg
tttgcgaatcaagcggcgaaaggtgcaaagattcaacagatgaattataagaaagcggtg
gaaggattagaattaactcacgaacagtttgttgatttatgcatccttatgggatgtgac
tattgtgatacaatcaaaggaatcggccctaaaactgctcttaaattgattaaggaacat
ggaagtattgaaaagattataccagctttacaagatgagaaacccgttcccgcatacgtc
ttagcaagggaattattttttaaccacgaggttgacacggatgtggaactcaaatggaca
gcacccaaaaaggaagaattgactaagttccttgtggaagaggcaggctttaacgccgac
cgtgtcaaggcgtccatcgaaaaacttgacaaggcgcacactgcaaatcgcaaacctcaa
gctagaatggattccttctttgcagtcaaatcaaatccagccgctgacgcaaaacgtaaa
aagaaattacaagacgataaggccaaaaaaaagcaaaaggtaagtgatgatcgtaagaaa
aaggtcaagggtaagaaatag
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