KEGG   Fragilariopsis cylindrus: FRACYDRAFT_209669
Entry
FRACYDRAFT_209669 CDS       T04784                                 
Name
(GenBank) HEAT repeat-containing protein
  KO
K12828  splicing factor 3B subunit 1
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FRACYDRAFT_209669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_209669
   03036 Chromosome and associated proteins [BR:fcy03036]
    FRACYDRAFT_209669
Spliceosome [BR:fcy03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    FRACYDRAFT_209669
 Complex B
    FRACYDRAFT_209669
 Complex C
   U2 SnRNP specific factors
    FRACYDRAFT_209669
Chromosome and associated proteins [BR:fcy03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    FRACYDRAFT_209669
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EF3_N Htt_N-HEAT_1 HEAT_EZ HEAT_2 XMAP215_CLASP_TOG CTD MMS22L_C HEAT_Maestro
Other DBs
NCBI-ProteinID: OEU13347
JGI: 209669
UniProt: A0A1E7F5B5
LinkDB
Position
Unknown
AA seq 1047 aa
MISDNDSVTSNIVSKWDEDVSKSNVAGSRRKRWDDTPVVSSNASATPVVASGSATPAVNS
SSKWDETPVTFSGMGGQETPAITSEKKTNRWAETPAPVLPGMGSQTPGLAKALSLEKEMD
SRNRPWTDVALDAILPTEGYTIMRPPSSYVPLRTPGRKLLATPTPMSMTPQGFQMEIPVE
QRQDASVQDIREAYDAGALPYIKPEDMQYFGRLMEDTDDEKLTKEEANERRIMSLLLKIK
NGTPPQRKTAMRQITDRARSFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRVLYKLDD
LVRPYVHRILAVIEPLLIDEDYYARVEGREIISNLAKAAGLATMIATMRPDIDSPDEYVR
NTTSRAVAVVASALGVPALLPFLKAVCQSRKSWQARHTGIKIVQQIALLMGVAILPYLRE
LVEIVSHGLTDDMQKVRIITALTCAALAEAAHPYGIESFDSVIRPLWKGALEHHGKALAA
FLKAIGYVIPLMEENYASHYTRLVMPILLREFHSPDEEMKRIVLKVIQQCVATAGVEPEY
IRKEILPEFFRNFWIRRMALDRRNYKQVIETTEELANKVGSSDIITRIVDDLKDDSEPYR
RMVMETIRKVLENLGAGDIDDRLEERLIDGILYAFQEQAVDASSSLGKESQIMLDGFGAV
VVALGERCKPYLKQIAGTIKWRLNNKAASVRMQAADLVARVAVVMKACDEDQLMGHLGVV
LYEYLGEEYPEVLGSILGALRAIVNVIGMTKMTPPIRDLLPRLTPILRNRHEKVQENCID
LVGRVADRGAEFVSAKEWMRICFELLEMLKAHKKAIRRAAVSTFGFIARAIGPQDVLHTL
LNNLKVQDRQMRVCTTVAIAIVAETCGPFTVLPALMNEYRVPELNIQNGVLKAISFMFEY
IGVMGKDYAYAVTPLLEDALMDRDPVHRQTGCAAVKHLALGVAGHGCEDALLHLLNFVWP
NIFEESPHVIQAVFDAIQGLMVSLGPNVILQYTLQGLYHPARKVREVHWRIFNILYIYNS
DALVAGFPMVEDEEENTYARTTLELFI
NT seq 3144 nt   +upstreamnt  +downstreamnt
atgatttcggataatgattctgtcacttctaatatagtgtcaaaatgggacgaagatgtg
agcaaaagcaatgttgctgggagtagaaggaaacgatgggacgatactcctgtcgtctcg
tcaaacgcttccgctacccccgtcgtggcatctggtagcgcgacacctgccgttaattct
tcaagcaaatgggatgagacgccagtaacattctctggaatgggaggtcaagagacgccg
gcaataacatctgaaaagaaaacaaaccgatgggctgaaacgccggcacctgtacttccc
ggcatgggctcacagacacccggtcttgccaaagcattatcgttagagaaggaaatggat
tcccgtaatcgtccttggacggatgttgcccttgatgcgattctccccaccgaaggttat
acaattatgcgtccaccttcgagttatgtcccgttacgtacaccaggacgcaaattgctc
gcgactccgacgcccatgtcgatgactccacagggttttcaaatggaaattccggtcgaa
cagagacaggacgcatccgttcaagatatacgtgaggcgtatgatgctggtgccttaccg
tacatcaaaccggaagatatgcaatactttggtaggctgatggaagataccgacgatgaa
aagcttacgaaagaggaagctaacgaacgacgcataatgtccctgctattgaagataaag
aacggtacaccgcctcaacggaagacggcaatgcgacaaattacagatagagcgcgaagc
tttggggcgggaccacttttcaatcaaatcttacctctgttgatgagtccaactctggag
gatcaagaacgtcatttattggtgaaagtaatcgatcgagttttgtataagctagacgat
cttgtccgcccgtacgtgcatagaattctagctgtaatcgaaccattacttatcgatgaa
gactattatgcccgtgtggagggtcgagagattatcagcaatttggctaaggctgcggga
ttagcaactatgatcgcgacaatgcgacctgatatagatagtcccgatgaatacgttcga
aacacgacctcgcgtgcagtagctgtggttgccagtgcacttggagttcccgcccttctt
ccgttcctcaaagcagtgtgccaatctagaaagtcttggcaagctcggcatactggtata
aaaatcgtccaacaaattgcgctattaatgggcgttgctatattaccttatcttcgggag
ctggtggaaatcgtaagtcatggccttacagacgatatgcaaaaagtacggatcattact
gcgttgacttgtgctgcacttgcagaagccgcacatccgtatggtatcgaaagttttgat
tctgttattcgtccgctgtggaaaggagcattggaacaccacggaaaagcacttgctgca
tttttaaaagctattgggtacgttatccctctaatggaagagaactacgctagtcattat
actcgattagtgatgccgattcttttgagagaatttcattctccagatgaagagatgaaa
cgaattgttctaaaggtgatccagcagtgcgtggcaacagctggtgtagaaccagaatac
attcgaaaagagattttgcctgaattctttcgcaatttctggattcgaaggatggctctc
gatcgaagaaattacaaacaagttatcgagaccaccgaagaacttgccaataaagtagga
tcttcggatatcatcacccgtatcgtggatgatttgaaggatgattccgagccctatcgt
cgcatggtgatggaaacgattcgaaaagtgttagaaaatcttggcgcaggagacatcgac
gataggctagaagagagattgattgacggtatattgtatgcattccaagaacaagcggtg
gatgcttccagcagcctcggtaaagagagccagataatgctagatggcttcggcgccgtg
gttgtagcactgggcgaacgttgcaaaccttacttaaagcaaattgcaggaacaattaaa
tggagacttaacaacaaagccgcttcggttcgaatgcaagctgcagatctagtggctcga
gttgccgttgttatgaaggcttgtgatgaagatcagctaatgggacacttaggtgttgtc
ctctacgaatatttaggcgaagaatatcctgaagttctgggttcaattcttggtgctctt
cgtgcaattgtgaacgtgatcggtatgactaaaatgacaccacccatacgcgatctacta
ccgaggttaactcctatcttgagaaatagacatgaaaaagtgcaagagaattgtatcgat
ttggttggacgggtagctgatcgtggtgcagaatttgtttcggcgaaagaatggatgaga
atttgctttgagttattagaaatgctcaaggcgcataagaaggctattcgtcgtgctgcc
gtaagtacgttcggatttatcgctcgagctatcggaccgcaagatgttctacacaccctc
ttgaacaacctgaaagtacaagatcgacagatgcgtgtctgtacgaccgttgccattgca
attgtggcagagacatgcggacctttcactgttcttcctgctcttatgaacgaataccgt
gttccggaacttaacattcaaaatggagttctgaaggcgataagcttcatgtttgaatat
attggcgtaatgggtaaagattatgcctatgctgtcacaccacttctagaggatgctctc
atggatcgggatcctgtgcatcgtcaaactggttgtgcagcagtcaagcatctggctcta
ggagtagctggtcatggctgtgaggatgcccttctgcatctgcttaacttcgtgtggccg
aatatttttgaggaaagtccccatgtcattcaagcggtctttgatgctattcaaggtctc
atggtgtctctcggtccgaatgtgattctgcaatacacattgcagggactctatcatcct
gctcgaaaggttagggaggtacattggagaatttttaacattctctatatatacaattcc
gatgctcttgtcgctggctttcccatggttgaagacgaagaggagaacacatacgcacga
accacacttgagctttttatttga

DBGET integrated database retrieval system