Fragilariopsis cylindrus: FRACYDRAFT_211019
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Entry
FRACYDRAFT_211019 CDS
T04784
Symbol
RPA1a
Name
(GenBank) replication factor-a protein
KO
K07466
replication factor A1
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03030
DNA replication
fcy03420
Nucleotide excision repair
fcy03430
Mismatch repair
fcy03440
Homologous recombination
fcy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRACYDRAFT_211019 (RPA1a)
03420 Nucleotide excision repair
FRACYDRAFT_211019 (RPA1a)
03430 Mismatch repair
FRACYDRAFT_211019 (RPA1a)
03440 Homologous recombination
FRACYDRAFT_211019 (RPA1a)
03460 Fanconi anemia pathway
FRACYDRAFT_211019 (RPA1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fcy03000
]
FRACYDRAFT_211019 (RPA1a)
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_211019 (RPA1a)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_211019 (RPA1a)
Transcription factors [BR:
fcy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
FRACYDRAFT_211019 (RPA1a)
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
FRACYDRAFT_211019 (RPA1a)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
FRACYDRAFT_211019 (RPA1a)
MMR (mismatch excision repair)
FRACYDRAFT_211019 (RPA1a)
DSBR (double strand breaks repair)
HR (homologous recombination)
FRACYDRAFT_211019 (RPA1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
SHLD2_OB1
POT1
DUF223
DUF2271
DUF7589
Motif
Other DBs
NCBI-ProteinID:
OEU12326
JGI:
211019
UniProt:
A0A1E7F2H4
LinkDB
All DBs
Position
Unknown
AA seq
590 aa
AA seq
DB search
MSAQSLTQDAVRTLIGSNEGHQDSSFSPVCQIINIKNVTNKNDGNDRYRIILSDGVHYIQ
GMVATQLKHLMIDGSVKTHNIIRINEYMVNTVQAKKICIILNLDVIDTSPSEKIGEPVDI
EKVGAINLMANSSNNNSSSSTASAAPIGPRITPISQLNMYQNRFTIKARVTSKGDIKTWS
NAKGEGCLLSMEVLDASGSDIRITMFKEAVEKWNPYFHLGEVYTITGGRLKVANMQYNTC
KSQFEMTIDVNTEIAKVEDSNEIKTQMFEFIKIGSLEEKEEKSYVDIIGIVQEVGEVQTL
TSKRTGNELVKSDVTLIDDTGVQVRLTLWGTTASSAKEKLAGEPVVAFRRARVSDYGGKT
LSGGDVFVEPDVPETEDIRRWWKSQGSRSAPVKSLSSSGGAGGKMDSFNDRKTIADIKNQ
HLGQNNEKGDYLTFKAHFTFLKKDKEGGAWYTACPNKEDPCRNRCKINQSTDGSYACDRC
HGNFPTCDRKWIFSGTVADGMASTWVSVFDEQGQQLLGTTANAMFEQYESNQDEYDATFA
RGAFTEWVFKCRVKQEMVNDEPRIKTQVVRMEPVNYVTECRDMIAALERM
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcacaatccttaactcaagatgctgttcgtaccctcattggttcgaatgagggg
catcaggattcgtccttttctcctgtatgtcaaattattaatatcaaaaatgttacaaat
aagaatgatggtaatgatcgttatcgtattattttaagtgatggagtacattacattcag
ggtatggtcgctactcaattaaaacatttaatgatcgatggtagtgtgaagactcataat
attattcgtatcaatgaatatatggtcaataccgtacaggcgaaaaagatttgtattata
ctaaatttagatgttattgatactagtcccagtgaaaaaatcggcgaacctgttgatatt
gaaaaggttggtgcaataaacttaatggcaaatagtagtaacaataattcgtcatcgagc
acagcatctgctgctccgattggtccacggattacaccaatctctcaacttaatatgtat
cagaatcgttttactattaaggcacgtgttacatccaagggggatatcaaaacttggtcg
aatgcaaagggtgaaggttgtttattatcaatggaggtattagatgcaagtgggtccgat
atccgtataacaatgtttaaggaggctgttgaaaaatggaatccatattttcaccttggt
gaggtttatactattaccggtggtcgtcttaaggttgctaatatgcaatacaatacatgt
aaatcacaatttgaaatgacaattgatgtcaatactgaaattgccaaggtggaagattca
aatgaaattaaaacacaaatgtttgaatttattaagattggtagcttagaagaaaaggaa
gaaaaatcatatgttgatattattggtatcgtccaagaagttggtgaggtacaaactttg
acgagtaaacgtaccggaaatgaattagtcaaatcggatgtcacattaattgatgatact
ggtgtacaggtccgtttaaccctatggggtactaccgcatcaagtgcaaaggaaaaactc
gcaggagaaccggtcgttgcattccgtcgggcacgtgttagtgattacggtggtaagaca
ttaagtggtggagatgtcttcgtcgaaccggacgtacctgaaacagaagatatccgccgt
tggtggaagtctcagggtagtcgtagtgctcctgtcaagtctctttcatcaagtggtggc
gcgggaggtaaaatggatagtttcaatgatcgtaagactattgctgatatcaagaatcaa
catttgggtcaaaataatgaaaagggtgattatttaacattcaaggctcattttacattc
ctaaagaaggacaaggagggtggtgcatggtatacagcatgtcccaacaaggaagatcca
tgccgtaatcggtgcaaaatcaaccagtccaccgatggaagttacgcatgtgatcgttgt
catggcaattttcctacttgtgaccgtaaatggatcttttctggtactgttgcagatggg
atggcatcaacatgggttagtgtctttgatgaacagggtcagcaactattgggaacaaca
gccaatgcgatgtttgaacaatatgaatcgaatcaagatgagtacgatgcaacatttgct
aggggtgcctttactgaatgggtgttcaaatgtcgtgtcaagcaggaaatggtcaacgac
gaaccacgtattaaaactcaagtcgttaggatggaacccgtcaattacgttaccgaatgc
agggatatgattgctgcattagaacgaatgtaa
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