Fragilariopsis cylindrus: FRACYDRAFT_212924
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Entry
FRACYDRAFT_212924 CDS
T04784
Symbol
MSH6
Name
(GenBank) MutS_V-domain-containing protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FRACYDRAFT_212924 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_212924 (MSH6)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
FRACYDRAFT_212924 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_II
MutS_IV
Motif
Other DBs
NCBI-ProteinID:
OEU08107
JGI:
212924
UniProt:
A0A1E7EQL6
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MGNEPLRTNDEKGALNIRGAHIHNHLQFLRYPQDSMGRYRDHINYDCRTLKVNYQEWNTV
MNCKEMTSAVKQWWEIKSNYFDTILFFKTGKFYELFHMDADIGVQILGFNYMKGKPAHAG
FPEISYGQFADKLVRAGYKVARVEQTETPAMLQIRKSSTPKSQKKPQVVNREVCSIMTLG
TRTYCSLDVKLALLEEGGGKLSQDGDDQCGGPLLVIREVLYDQDNDDDQDDDDQGSTDGG
VQPVCEYGITLIDAIRGTVTLGMFADDVLRNRMRTLLISFHPSEILIQGGGRKSIEIINQ
NESYPKSTALNKEHARNLERDDTVRPWNVNETLQELHRRKYYPRSSRKKSNNNNNDVSRW
PIVLKMVVEGDANLCLSSFGAALFYLQRNLIDREILSMNIVRAYIPAAVTSVSAGLADNN
GEDTITHMSLDGTTLHNLEILTNAVDYKIVGSLWSKLNYTKSPHGSRMLRAWLLRPLFKK
NEIERRGDAVEELIRGAGNLSLKEARDSVLNKIGDLDRLLSRVHSMSVGVSSGCGSPVVC
NDDDDDYDDDIISNEYHPNERAVLYEGKTYTKRKVSDFKNLLKGLQKACQLPEIFSDIDL
DPNGFVFKLVRLQKDGGLFPDMVESLDWFMDNFDCEKAASGEFVPSRGTDPIYDQACDTV
NQVKEDLENYKQEMIQDHLKPRHVAQRSWKYANIKPDSKDKYLIELPVNVQVPHDFHVKG
KRGTGQKQINKYQTPMVVELVKELEQAYEIQQTRKAKGMQIIFAKFDTQRPLWAAAAQAT
AILDALGSLAIMAGNPGYCRAEILDCPAHQQPSINIVQGRHPVVENTFHSSDFIPNDLQL
GPNPNNMDDNTENGDSGDSARLLLLSGPNMGGKSTMLRQTCLIAILAQIGSYVPAESCQM
TPIDCIFTRLGASDRILLGQSTFFVELAETAAALRGATRRSLVIMDELGRGTSTFDGTAI
ASATVKHLVERSQCLSLFATHYHSLLDEWRNAPNVRLGHMQCIVDDENENETTTGSNGNI
TFLYTLGLGSCPRSFGINVAKLAGLPDEVLANAKRVSEEFEDEMNGVGSDTEVGTAVGPH
VSDEEANNHLENIRQLIACQQFDDVLSVWKTIQTI
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatgaaccattacgaacgaatgatgaaaaaggtgcactgaatattcgtggtgca
catatacataatcatttacaatttttaagatatccacaagattcaatgggtcgatatcgt
gatcatattaattatgattgtcggacattaaaagttaattatcaagaatggaatacagtc
atgaattgtaaagaaatgacatccgctgtgaaacaatggtgggaaatcaaatccaattat
tttgatactatccttttctttaaaactggtaaattttatgaattatttcatatggatgct
gatattggtgtccaaatattaggtttcaattatatgaaaggtaaaccagctcatgccgga
tttccggaaatatcgtatggacaatttgcagataaattagttcgtgctggatataaagtg
gcacgtgtcgaacaaacagaaacaccagcaatgttacaaattcggaagagtagtacacca
aaatcacaaaagaaaccacaggtagtaaatagagaagtttgcagtattatgacattagga
acaagaacctattgttccttagatgtaaaattagcattattggaggaaggtggtggtaaa
ttatcacaagatggtgatgatcaatgtggtggtccattattagtcatccgtgaagtttta
tacgatcaagataatgatgatgatcaagatgatgatgatcaaggttcaaccgacggagga
gtgcaaccagtatgtgaatatggtattacattaattgatgcaatacgtggtactgttaca
ttagggatgtttgcggatgatgtattacggaatagaatgagaacattattgattagtttt
catccatcagaaattttaatacagggtggaggaagaaaatctattgaaattattaatcaa
aatgaatcctatccaaaatcaacagcattaaataaggagcatgcacgtaatttagaacgt
gatgatacggtccgaccatggaatgtcaacgaaacattacaagaattacatcgtagaaag
tattatccacgttcatcacgaaaaaaaagtaataataataacaatgatgtatcacgttgg
ccgattgtattaaagatggttgtggaaggggatgctaatttatgtttatcatcttttggt
gctgcattattttatttacagcgtaatctaattgatcgtgaaatattaagtatgaatatc
gttcgtgcatacatcccagcagcagtaacatccgtatcagcaggtttagctgataataat
ggtgaagatacaattacacatatgtcattagacggaacaacactgcataatttagaaata
ttaacaaatgctgtggattataaaattgttggctctttatggagtaaattaaattataca
aaaagtccacacggatcaaggatgttacgtgcctggctcttacggccattatttaaaaag
aatgaaattgaacgtcgaggtgatgcggtagaagaattgattcgtggtgcagggaattta
tctctaaaggaggcacgtgattctgtactaaataaaattggtgacctagaccgattatta
agtcgtgtccatagtatgagtgttggagtttcatctggttgtggtagtcctgttgtatgc
aacgacgacgacgacgactatgatgatgatatcatctcgaatgaataccatcccaatgaa
cgagctgttctctatgaaggtaaaacatacacgaaacggaaggtatcagatttcaagaat
ttattaaagggattacagaaggcatgtcaattaccagaaatattcagtgatatcgacttg
gatccgaatggatttgtgttcaaattagttcgactacaaaaggacggtggcttgttccct
gatatggtagaatcacttgattggtttatggacaattttgattgtgaaaaagccgcaagt
ggtgaatttgttccatcacgtggtacggatccaatttacgatcaagcttgtgatactgtc
aaccaagtgaaggaggatcttgaaaattacaaacaggaaatgatccaagatcatttgaaa
ccacgtcatgttgcacaacgttcatggaagtatgcgaatatcaaacctgattcgaaagat
aagtatttgattgaacttccagtgaatgtacaagttcctcatgattttcacgtaaagggg
aaacgtggtaccggacaaaaacagattaataaatatcaaacacctatggtggttgaatta
gtaaaggagctggaacaagcgtatgaaatccaacaaacacgtaaagcaaaaggtatgcaa
attatatttgctaaatttgatacacaacgtccattatgggcagcagccgcacaggcaaca
gcaattttagatgcactcggttcgttagcaattatggcaggtaatcctggatattgtcgc
gcagaaattttagattgtccagctcatcaacaacctagtattaatattgtacagggacga
catcccgtcgttgaaaataccttccattcatcagatttcatccccaatgatctacaactt
ggaccgaatccgaataacatggacgacaataccgaaaatggcgatagtggtgattcggca
cgattgctattactttccggtccaaatatgggtggcaaatcaacgatgttgcgtcaaaca
tgtcttattgctatccttgctcaaattgggagttacgttcctgccgaaagttgtcaaatg
actcctattgattgcattttcactcgattaggtgcatcggatcgaattcttttaggccag
tcaacatttttcgttgagttggcggagacagctgcggcgcttcggggggcaacgagacga
agtttagtcatcatggatgaactcggtagaggtaccagtacgtttgatggaacagcgatt
gccagtgcaactgtcaagcacttagtagaacgaagtcaatgcttgagtctattcgcaact
cattaccattctcttttggatgaatggaggaatgcacccaatgtgagacttggtcatatg
caatgcattgttgatgacgaaaacgagaacgagactactactggaagtaacgggaatatc
acgtttttatacacgttgggtttaggatcgtgtcctagatcctttgggattaacgtagcc
aaacttgctggtctaccggatgaagtattggctaacgcaaaacgtgttagtgaagaattc
gaagatgaaatgaacggtgttggtagtgatactgaagtaggaaccgccgtcggaccacat
gtaagtgacgaggaagcaaataatcatcttgaaaacattcgacagctgattgcttgccaa
cagtttgacgacgttcttagtgtttggaagaccatccaaacaatctga
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