Fragilariopsis cylindrus: FRACYDRAFT_223488
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Entry
FRACYDRAFT_223488 CDS
T04784
Name
(GenBank) histone deacetylase-like protein HD1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03082
ATP-dependent chromatin remodeling
fcy03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
FRACYDRAFT_223488
03083 Polycomb repressive complex
FRACYDRAFT_223488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_223488
Enzymes [BR:
fcy01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
FRACYDRAFT_223488
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
FRACYDRAFT_223488
HDAC complexes
Sin3A-HDAC complex
FRACYDRAFT_223488
BRAF-HDAC complex
FRACYDRAFT_223488
REST complex
FRACYDRAFT_223488
SHIP complex
FRACYDRAFT_223488
MiDAC complex
FRACYDRAFT_223488
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
FRACYDRAFT_223488
Heterochromatin formation proteins
Other heterochromatin formation proteins
FRACYDRAFT_223488
Chromatin remodeling factors
NuRD complex
FRACYDRAFT_223488
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-ProteinID:
OEU22520
JGI:
223488
UniProt:
A0A1E7FWJ2
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MGKDRVSYFYHPTTPLHYYGPSHPMKPHRLKLAHHLILAYKLYTKMECYRCHPASAAEMA
QFHSDEYVQFLSKITPDNLRTYSGVLQKFNAGDTTDCPVFDGLYDFVQLYTGASLDGAIQ
LNQQQADICINWSGGLHHAKKSEASGFCYINDIVLAILELLKVHARVLYVDIDVHHGDGV
EEAFYTTDRVMTLSLHKYGDFFPGTGHIQDVGAKDGVGYSVNAPLQAGITDDTYLNDLFI
PVFDKIMEVFQPGAIVLQCGADSLTGDRLGCFNLTTRGHASAVKHVKGYGVPTLVLGGGG
YTIRNVARCWAYETSVLLEEPIENNIPFNDYYEYYAPDFELHLKPDPSMANANDNLTSIR
TELLQQLQDLQGAPSVQMQQVPPAFRTTAADDNDDMDEDEGAKGLSRKRMKKPHSAELYD
EVD
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagatcgagtttcttacttttatcacccaaccacgccccttcattattatggg
ccgtcccatcccatgaaaccgcaccgtcttaagttggcacatcatttgattttggcatac
aaactgtataccaagatggaatgttacagatgtcatccagcctcagctgctgaaatggca
caatttcattcggatgaatatgttcaattcctttcgaaaattacccccgacaacttacga
acatactcgggtgtactgcaaaaattcaatgcgggtgatacaaccgattgtcccgtcttt
gatggactttatgactttgttcaactttacaccggtgctagtctagatggagcaatccaa
ttaaatcaacaacaggccgacatttgtatcaattggagtgggggactccatcacgcaaag
aagtctgaagcatctggattctgttacatcaatgacatcgtccttgctattcttgagttg
ttaaaggttcatgctagagtcttatatgttgatattgatgtccatcatggagatggagta
gaagaagctttctacacgacagatcgtgtcatgaccttaagtctgcacaagtatggggac
ttctttcctggaacgggtcatattcaagatgtgggggctaaggatggtgtgggttattct
gttaatgcaccactccaggctgggatcaccgatgacacgtacctaaacgatttgttcatt
cctgtctttgacaagattatggaagtctttcaaccgggtgcaattgttttgcaatgtggt
gcagattcgttgacgggcgatcgattaggatgttttaacttaacaacgcgtggtcacgct
agcgctgttaagcacgtcaagggttatggagttccaaccttggtgttaggtggtggtggg
tacaccattcgtaacgttgctcgttgttgggcatatgaaacgtccgtcctcttggaggaa
cccatcgaaaataacatccccttcaacgactactatgaatactatgcaccggactttgaa
ttacatctgaaacctgatccgagtatggccaatgcgaatgacaatctaaccagcatacga
accgaacttttgcaacaattacaggatttacaaggcgcaccatcggtacaaatgcaacag
gttccaccagcctttcgaacaacagcagctgatgataacgacgacatggacgaagacgaa
ggggcaaaggggctgtctagaaaacgaatgaagaaaccgcattcggcagagctgtacgat
gaagtagactag
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