KEGG   Fragilariopsis cylindrus: FRACYDRAFT_224004
Entry
FRACYDRAFT_224004 CDS       T04784                                 
Name
(GenBank) hypothetical protein
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03020  RNA polymerase
fcy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FRACYDRAFT_224004
  09124 Replication and repair
   03420 Nucleotide excision repair
    FRACYDRAFT_224004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fcy03021]
    FRACYDRAFT_224004
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_224004
Transcription machinery [BR:fcy03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     FRACYDRAFT_224004
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FRACYDRAFT_224004
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L DUF6252 LAMB4 Cep57_MT_bd
Other DBs
NCBI-ProteinID: OEU20619
JGI: 224004
UniProt: A0A1E7FR34
LinkDB
Position
Unknown
AA seq 125 aa
MNAPERTASFLLDEDSGEVKIVYSDDTKVTNAGTFRFNKEDHTIGNLFRMQLLRDPSVRF
AGYLHPHPLVYYINLKIQTNNSTVAPVEVLSSAIEDLANETDHLITQFQEATDNWKREND
TEGQF
NT seq 378 nt   +upstreamnt  +downstreamnt
atgaacgccccagaaagaacagcatcgtttctcctagacgaagatagtggagaagtcaag
atagtgtactcagatgatacgaaggtaacaaatgctggtacctttcgttttaacaaggag
gatcatactattggaaatctttttaggatgcaattattgagagatccttcagtacgattt
gcgggatacttacatcctcatccgctcgtatattatatcaatcttaaaattcaaacgaat
aattcaacagtcgcaccagtcgaagttctatcatcagcaattgaagatttagcgaatgag
actgatcatttaatcacacaatttcaagaggccacagacaattggaagcgggaaaacgat
acagaagggcaattttag

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