Fragilariopsis cylindrus: FRACYDRAFT_224661
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Entry
FRACYDRAFT_224661 CDS
T04784
Name
(GenBank) WD40 repeat-like protein
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FRACYDRAFT_224661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fcy03009
]
FRACYDRAFT_224661
Ribosome biogenesis [BR:
fcy03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
FRACYDRAFT_224661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP15_C
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
EIF3I
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_RIG_1st
NBCH_WD40
Beta-prop_WDR11_2nd
Beta-prop_IFT140_2nd
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-ProteinID:
OEU20118
JGI:
224661
UniProt:
A0A1E7FPM9
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MGTPSTRNYKTTSTLQSKRHTVASVTLGQDGFADTNEARYWTQKLGIGSSKKYDTSKNAK
KYAHSRSLYIPPNREAIAQQVLFGPLLTSKHPPFAVVCGPRVNLYGTSTTGSSFVRALYQ
SGNTKTNSSSNENNPLVINELEPDRSVQTGGNLALGASFRNDGRLLAVGTDAGEARICDV
TMRSTIATFSSNTMPIRSIEWFRNGQYILTGGDDGIARIWNLSSTQKTKPMIQLKGHGDV
IRCTALWQQEKKKKTATATSTQQQQWTELAVTGSYDHTIRVWNVHNVGVEQQKPKQNNMS
MMMMMDVDDDGSGKKEAEKEDEQSRCLAVLNHGAPVEALCFLKSENNPDVPMWLLSAGGT
TIKVWNPLSGQCIATVTTHHRKTITSLLPVLRTNYEDDSTKMKTISQRILSASLDGVIQI
HSWDPKTGAMRHLYSTKLTDSITSVATDTTGDRFAFGTVSGHVLFKMKGPSVTDKKSTKV
PKAGTYSFFQRGMNADPNSGDYTVTTKTKKQRKLNKYNFALKKFRYAEALDEVISTRNPK
NIAGVLEELGKRRGLTHALSNRDEETLEPILRFVSRYIKKPDYTSILVGVAHILIDIYGD
VAGESDEVDGLFRKLKHQIKLECMAQKSLMLLVGQIEASMTGSATVTPSL
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaccgtcaacacggaactacaaaacaacatcgacactacaatcgaaacgacat
acggttgcatcggttacgttaggacaggatggatttgctgatacgaatgaggcacgatat
tggacacaaaaacttggtattggatcctctaaaaaatatgatacatccaaaaatgcaaaa
aagtatgcacattcaagatcactttatataccaccaaatcgagaagctattgcacagcaa
gttttatttggaccgttacttacatccaaacatccaccctttgcggttgtttgtggtcca
cgtgttaatttgtatggtacatccacaacgggttcatcttttgttcgtgctttatatcag
agtggtaatactaagactaatagtagtagtaacgaaaacaatcctcttgttattaatgaa
ttagaaccagaccgatctgtacagacgggtggtaatcttgcattgggtgcatcatttagg
aatgatggtcgattattggcggttggtaccgatgctggtgaggcacggatttgtgatgtc
actatgagatcaacaatagcaacatttagttcaaatacaatgccaatccgatcaattgaa
tggtttaggaatggacaatatatattaacgggtggtgatgatggtattgctcgaatatgg
aatcttagctcaacacaaaaaactaaaccaatgattcaattgaagggtcatggtgatgtg
atccgatgtacagctctttggcagcaagaaaagaagaagaaaacagctaccgcaacgtct
acacaacagcagcaatggacagaattggctgtaactggaagttacgatcatacgattcga
gtttggaatgtccacaatgtaggagtagaacaacaaaaaccaaaacaaaataatatgtca
atgatgatgatgatggatgtggacgacgatggtagtgggaagaaggaggcagaaaaagag
gacgaacaaagccgctgtcttgccgtacttaatcatggagcaccagtagaagcactttgt
tttcttaaatcggaaaacaatcctgacgtaccaatgtggttgttgtcagcgggtggtacg
actatcaaagtatggaatccattaagtggacaatgtattgcaacagttactactcatcat
cgtaaaactataacaagtctactaccagttttacgaactaattatgaagatgactcaaca
aagatgaaaacaatttcgcaacgtatattatcagctagtttagacggtgtaattcaaatc
cattcatgggatcccaaaactggtgcaatgagacatttgtatagtactaaattaaccgat
tctattaccagtgttgctaccgatacgactggtgatcgatttgcattcggtacagtgtct
ggacatgtattatttaaaatgaaaggtcctagtgttactgataaaaaaagcactaaggtc
cccaaggctggtacatacagcttctttcaacgtggtatgaatgctgatccgaattcaggt
gattacactgtaacgactaaaacaaagaaacaacgcaaattaaacaagtacaattttgca
ttgaaaaaattccggtacgcagaagcattagatgaggtcatttcaacaagaaatcctaag
aatattgctggtgtattagaagaacttggtaagcgacgtggactgacacatgcattgtct
aatcgtgatgaggaaacattagaaccgattctgcgattcgtttcacgatatattaaaaaa
ccagattatactagtatcttggttggagtggcgcatatccttattgatatttatggtgac
gtcgcaggggaatcggatgaagttgatggattatttagaaaattgaaacaccagatcaaa
ttagaatgtatggcacagaaaagtcttatgttacttgttggacaaattgaagcatctatg
actggttctgctactgttacgccatcgttgtag
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