Fragilariopsis cylindrus: FRACYDRAFT_225661
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Entry
FRACYDRAFT_225661 CDS
T04784
Name
(GenBank) DEAD-domain-containing protein
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_225661
03009 Ribosome biogenesis [BR:
fcy03009
]
FRACYDRAFT_225661
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRACYDRAFT_225661
Spliceosome [BR:
fcy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
FRACYDRAFT_225661
Ribosome biogenesis [BR:
fcy03009
]
Eukaryotic type
90S particles
Helicases
FRACYDRAFT_225661
Pre-60S particles
FRACYDRAFT_225661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ERCC3_RAD25_C
SPT6_acidic
SOBP
Tim54
Motif
Other DBs
NCBI-ProteinID:
OEU16392
JGI:
225661
UniProt:
A0A1E7FDY5
LinkDB
All DBs
Position
Unknown
AA seq
578 aa
AA seq
DB search
MTKKRSKSRSPRKQEEEPSSSDPVEDVVVSEEHEEKDTESETDSQKKRKKKKKKKKKRDE
EEEEETTGEIPASNVKKGFFSEQSFASLPLTEATQKSISFMGHDTMTKIQFKAIPALLAG
KDLIGAAQTGSGKTLAFLIPIVEVLRKAKFSTRNGTGAMVLSPTRELAMQTYGVCKELLG
DTSTLTYGLIMGGANRKTEAERLKKGVNIVIATPGRLLDHLQNSPGFIVRNLLCFCMDEA
DRMLEIGFEDDLRAIVKMLPKERQTMLFSATQTKKVEDLARLSINPKTAIYVEVKNIGKE
ATTENLEQGYVTCPSDKRFLLLFTFLKKNKNKKIMVFLSSCNSVKFHSELLNYIDIPVLE
IHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPPDDPREYIHRVG
RTARGASGSGRALMFLTPQETGFLRYLQAAAKVTLNEYEFPTSKIANVQSQLQSLIEKNY
YLNRSARDAYRSYLLAYASHSHREIYNVHELDLQAVGLAFGFTTPPRVDLAFSSRGDKTK
RNVKRGGNSKHQQSSGHKFSADNPYGKRDSSDRRQFSH
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagagatcaaagagcagaagtcctaggaagcaagaggaggaaccttcatct
tctgaccctgttgaggatgtggtcgtatccgaagaacacgaggagaaagatacagaatcg
gaaacggattcacaaaagaagaggaaaaaaaagaagaagaagaaaaagaagagagatgaa
gaagaggaggaagaaacaactggagaaattcctgctagtaatgtaaagaaaggattcttc
tctgaacaatcatttgcatcattgcctcttaccgaggcgacacaaaaatcaatcagcttc
atgggacatgatacaatgacaaagattcagttcaaagccattcccgcattactagctgga
aaggatttgatcggagcagcacagacgggctcaggaaagactctagcttttcttatacct
attgttgaggtgttacgcaaggccaaattttctactcgtaacggaacgggggccatggtt
ctgtctcccacccgagagttagcgatgcaaacctatggggtatgtaaggaattgttgggg
gatacatccactttgacttatggactaatcatgggaggtgccaatcgcaagactgaagcc
gaacgcctcaagaagggagtcaatattgtaatcgcaacacctggtagactacttgaccac
cttcagaactctccaggtttcatagttcgaaatctattgtgtttctgtatggatgaagca
gaccgaatgcttgagattggttttgaggacgacctacgtgctattgttaaaatgcttccc
aaggaacgtcagactatgttattttctgccacacagactaaaaaagtcgaagacttggcc
agactttccatcaatcccaagacagctatttatgtcgaagtcaaaaacattggtaaggaa
gctacgacagaaaatttagaacagggttacgtcacatgtccttcagacaagcggttcttg
cttctctttaccttcctaaagaagaataagaataagaaaattatggtcttcttatcatca
tgtaattctgtgaagttccactcagaactactgaattacatagatattccagttttggag
atccacggccgacaaaaacaggtcaagcgtaccacaactttctttcaatttcaaaaggct
aaaactgctactttactatgtacagatgtcgcagctcgtggtcttgatattcctgaagtt
gattggatcatccaattcgatcctccagacgatccccgggaatacatccatcgcgtagga
agaacagcacgtggtgcgtccggttcaggtagagctttgatgtttctaacaccacaagaa
acgggattccttcgttacttgcaagctgccgcaaaggtgacattaaacgaatacgaattt
cctacatcaaaaatcgcgaatgtccaatcccaactccagtcgctgatagagaagaattat
tatctgaaccgttctgctcgagatgcgtatcgaagttatctacttgcgtacgcaagtcac
tcccaccgtgagatctacaatgttcacgagcttgatttacaggctgttggcttagcgttt
ggttttacaactcctccccgagttgatctggcgttctcgtctcgtggggacaagacaaag
cgaaatgtcaaaagagggggaaattcaaagcatcagcaatcgtccggacacaaatttagt
gctgataatccttacggaaaacgtgactcctccgaccgaagacaattttcgcattaa
DBGET
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