Fragilariopsis cylindrus: FRACYDRAFT_236170
Help
Entry
FRACYDRAFT_236170 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K20305
trafficking protein particle complex subunit 8
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fcy04131
]
FRACYDRAFT_236170
Membrane trafficking [BR:
fcy04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
FRACYDRAFT_236170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAPPC-Trs85
Ig_TPPC8_C
Ig_TPPC8_2nd
SNAP
IFRD
Motif
Other DBs
NCBI-ProteinID:
OEU20102
JGI:
236170
UniProt:
A0A1E7FPL4
LinkDB
All DBs
Position
Unknown
AA seq
1737 aa
AA seq
DB search
MNTNHSSPQRNNDSNPVPVHETTELIPELASAPPSGNSTAAVIVSGGRDPLSSSSFFLPP
PPPPPPSSSSSRSGGSIGVAPSSGNAMPSSSRSFLPPPPRVTRPPASASSSTRTTTGLSP
TSATTLSPPPSSSSGVTVITAGIPYVPPPPPPPPPPPPPPPPAQSSQQTPIIDTLPTYTT
TYTTSNVAAPSPPPFLPVTTFIPPISSSKEQSILARRQTHVPVLIIATEEANKLAWKNGM
QLSDLFQGVIEEIKPSLPNMTPFRSVNRSLFLKDVRVRFVTSTQLDPLSCSDAQEMLDNN
AALRDEDGDVDQDLTLLEDRVDELLQEREKNREENLEDVANDAFRLTSPLDSMPWLIRYR
HALDRSTDGLPHDLICCPPLVLLVCTATKEIERPETILQELYESNHVLPDAYKKGIYDPS
TMRQEVLVLHDNNDDGHDNNSLDEVGLRQLLRSRFGSNAAVLRINSVSYETSAALAIQET
SDLWGGKGKLGTFLSDNDRILLRRYFRSLLTTSLLPSMERRIADLNLIVNERKKGMRNLV
KSFWRKPKDDTTTGSSPGGATNNVYNNSSIGSKSGGGASGDVGEDAIKYRYDSIESQTLL
LADTLFLLEDYENALSNYRLIRDDYKSDKALVQHGNVLEMMGLCMYQLDPYMRAREIFNL
FETALLNYTRAAEEERIRFEALARSSGELFTARQRSTPHVTRLAARLSLVLATVADTLAR
NRNLECADLLASVSSYESSLGGAVLMEQSSVFYFKAGMFRKYAFHMLMSGHLFQKAGQDH
HAFRCFASALYIYRNGMWDKLYNHLKSALAAQLYTMRRMSVALILYAKLVGTTGGGKVSI
QSQQKFVQHLIEICVDHTKAALAGADRIVPRSIPRNRRDIYRNERLERVVNIIRYTIGAS
RVLELPYVDLPNIADSSVRIWTKSDSTGDEKGESSMGVEEHFGKLANGETKIWEELELMT
VAEINNAALLVSNSNNDSSNQLQETITAALAKIADPRHRRLISEIDKEKQNRTLAERSKR
SSTKKSLPVVRAKGEPMFCDFQMKNPLGIEVQITEIQVVAQMVDSRKRKCTNEFAIELKD
ETIADFQKSEWTFTSSDHLQFQVPNFCRISEPNVKSCTSAQSDPFFVVTNQSIELPPGGE
MVISAGITPLVQGDLEILGVRCKLQDKVWLYHAFDIPGPLLKDTRANIMNRARGESMYLK
AKVETDMPCLTAELIKRFPTESPTVTMDDGPLLEGQISMWTIRLRNVGTAPASAVTLKTN
LPWIDIVGNDDSSLTIEEKESKATSRCIGPSGTLMTLPIEGMQTQTSASSVVEPGESIDI
PVRVRTSGDKKQDFYMLYRYELPGLTGDSKRRSRCLRKMYEVPVYPSLSFSAKPLATAWK
GKDILMSVELTNNRLDRPTDLYITLDRLSLTSRSYRLQALPDQFTKNEEFGDVLQIGWQE
RVTVHYRVISLKNENEDENCILSECPFSESGVSSTKACAASGKTDHLCLEDASKSFTSSW
EAHQLELIRIENTPDGEKEHPRSIASIRRANIPDIRDNEGSKRRENHPTSIANLCPLSLS
ASKVNLICSWRAILGQEVVHGDHYLRGISIRPLTFFRGCPITAIVDHAVSPISHDFSLGP
ALVPMKVTLKNCMLESSVKFSVSWEATSTFEVIGTTEQSLELDANEEVTIPFEALVPKAG
VHNLQMFRFVVQQHEQQQQQQEDATTYHLSQQWLIHIVDSSLRCRFQRLQQELTFGL
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgaatactaaccattcgtcacctcaacgcaataacgacagtaatcctgtacctgttcac
gaaactacggagttgatccctgaactcgccagtgctcctccatcggggaacagtaccgct
gcggttattgtttcgggaggaagagatccgctatcgtcgtcgtcttttttcttgccgcca
ccacctccaccaccaccgtcatcatcatcatcgcgttctggaggtagtattggcgtggca
ccaagttcgggaaacgcaatgccttcgtcttctcgatcctttcttccccctcctccacga
gtaacaagaccaccagcatcagcatcatcatcgactaggacgacgacgggattatcaccg
acttcagctactacgctgtcacccccaccgtcatcttctagtggtgttacggtaattact
gctggaattccttatgttccaccgcctccaccgccgcctcctccaccaccaccaccacct
cctcctgctcaatcttcccaacaaacaccgataattgacacattacctacatatactact
acttatactacatccaatgttgcagcaccatctcctcctccctttttgcctgttaccacg
ttcataccaccaatatcatcgtctaaggaacaatcaattttagctcgtcgacaaacgcat
gttcctgttttaattatcgctacggaagaagcaaataaattagcttggaagaatggaatg
caactttccgatttatttcagggtgttatcgaagaaatcaaaccttctcttccaaatatg
acaccatttcggagcgtaaatcgtagtttgttcctcaaagatgttagagtaagatttgtc
acatcgactcaactagatccattatcttgtagtgatgcacaagaaatgttggacaacaac
gccgccttgcgtgatgaagacggtgacgtagatcaagacctaacattgttggaggaccgt
gttgacgaattattgcaggaacgggagaaaaatagagaagagaaccttgaggatgtagca
aacgatgcattccggttaacaagtcccttagattccatgccctggttgattcggtatcga
cacgcattagatcgttcgactgatggattacctcatgatttaatctgttgtccaccgtta
gtactcttagtttgtaccgctaccaaagaaattgaaaggccggaaacgattttacaagaa
ctgtacgaatcgaaccatgtgctgcctgatgcgtataaaaaaggtatatatgatccatcc
acgatgagacaagaagttttggtcttgcacgataataacgatgatgggcacgacaataat
tcgttagatgaagttggtctgagacaactcctccgatcacgatttggttcaaatgcagcc
gttctgcgcataaatagtgtttcgtatgaaacatcggcggctttggccatccaagaaaca
tctgatctgtggggtgggaagggcaaactaggaacattcttgagtgacaatgatcggatc
ttgctacgacgttacttccgatccttgttgactacgtcactcttaccttcaatggaaaga
cggatagccgatttaaacttgatcgtaaacgagcgtaaaaagggtatgagaaatcttgtg
aaatccttttggagaaaacccaaggatgatactaccaccgggagcagccccggtggcgca
accaataacgtctacaacaactcatcgattggtagcaagagcggaggaggcgcgagtgga
gatgtcggcgaagatgccataaagtatcgatacgattccatcgaatctcaaacactactg
ttggccgatacgctattcttgctggaagattatgagaacgcattgtccaattatcgattg
atccgggacgattacaagtccgacaaggctttggtacaacatggtaacgttctagaaatg
atgggtctttgtatgtatcaattagatccctacatgcgagctagagaaattttcaatcta
ttcgaaacagcgctattaaattacacacgcgctgcggaagaagaacggatccgatttgag
gcattagctagatcgtcgggggaactatttaccgcacgacaaagatcaactccccacgtt
acacgactggcggctcgtttgagtctagtcttggcaaccgtggcggatacattagcaaga
aatcgcaatctggaatgtgccgatttgttggccagtgtgagctcgtacgaatctagctta
ggtggtgcagtcttgatggaacaatcaagtgtgttttacttcaaagccggtatgtttcgc
aaatacgcttttcatatgctaatgagcgggcatttgttccagaaggcgggacaagaccat
cacgcatttcgttgttttgccagcgcactgtacatctatcgcaatgggatgtgggacaaa
ctatacaaccatttgaagagcgcattagcggcacaattatacacgatgagacgcatgtct
gttgctttgatcctgtacgcgaaattggtaggaacaactggtggagggaaagtttcgatc
caatcacagcaaaagttcgttcaacatttgatcgaaatctgtgtggatcatacgaaggct
gcattggcgggagctgatcgaatagtgccccgaagtattccaagaaaccggcgagatatt
tatcggaatgaacgacttgaacgagttgtgaatattataagatatacgataggtgcatcc
cgcgttttggaactaccatacgttgatttaccaaacatagctgattcaagtgttcggata
tggacgaaatctgattcgacaggagacgagaagggagagtcctcaatgggagtcgaagaa
cacttcggaaaacttgctaatggcgaaactaaaatttgggaagaactagaactcatgact
gtagcggaaatcaataatgcggcgttgctagtatctaacagcaataatgacagcagtaac
caactgcaagaaacgattacagcagctttagccaagattgcagatccccgacatcgacga
ttaatatccgaaatagacaaggaaaaacaaaacagaaccttggctgaacgaagtaaacga
agcagtactaaaaaatcacttcctgtcgtccgtgctaaaggcgaacccatgttttgcgat
tttcaaatgaaaaatcctttgggtatagaagttcaaatcacagaaatacaagtggtggct
caaatggtagattcaagaaagaggaagtgtacgaatgaatttgctatcgagctgaaggat
gaaaccatcgccgatttccaaaaaagcgaatggaccttcacgagtagtgaccatttgcaa
tttcaagttccaaatttttgtagaatatccgaacccaatgttaaatcttgtacatctgct
caatcagatcctttctttgttgttaccaatcaatccattgaattgcctccgggtggagag
atggtaatttctgccggtattacaccgcttgttcagggagaccttgagatattgggtgta
cgatgcaagcttcaagataaagtttggctgtatcatgcttttgacattcccgggcctttg
ttgaaggacacaagagctaatatcatgaatcgcgcacgaggggagtctatgtatctcaaa
gcgaaggttgagactgacatgccgtgtctcacggccgagcttattaaacgattcccgacc
gaatcaccgaccgttacaatggatgatggtccactcctcgaaggacaaataagtatgtgg
acgatccggctgcggaatgtcggaacagcaccggcatcggcagtgactctaaaaacaaat
ttgccttggatcgatattgtgggtaatgatgattcaagcctcactatcgaagagaaagaa
tccaaagccacctcacgctgcataggtccatctggaacattgatgactttacccattgaa
ggaatgcaaacccaaacttccgcttcttctgttgttgaacccggcgaaagcatagatatt
ccagttagagtccgtacgtcaggtgacaaaaagcaagatttctatatgttgtatcgatat
gaactccctggactgacgggagattcgaagcgtcgcagtcgttgcttaagaaaaatgtat
gaagtaccagtgtatccttccctgtctttcagcgcgaagcctttggcgactgcttggaaa
ggtaaagacatattaatgtcagtggaattgacgaataatcgattggaccgtcctacagac
ttgtatataactcttgatcgtctaagcttgacgagtcgaagctatcgcctgcaagcatta
cctgatcaattcaccaaaaatgaagaattcggtgatgtactgcaaataggatggcaagag
cgagttactgtacattatcgagttatttcgcttaaaaatgagaacgaagacgaaaactgt
attttgagtgaatgtccattctcagaatcgggagtctcttctaccaaggcatgtgctgct
tctgggaagaccgatcatctttgtttagaagacgcttctaaatcgttcacgtcttcatgg
gaagcccatcaattagagttgattcggatagaaaatacaccagatggcgaaaaggaacac
cctcgatccattgcatcgattcgtcgtgcaaatattccagacatccgcgacaacgaaggc
tcaaaaagaagagaaaatcaccctacctcgatagcgaatctatgtccgctgtcgttaagt
gcttcaaaggttaatctaatatgttcatggcgtgccatattaggacaggaagtagttcac
ggcgatcattatcttcgagggatctcgattcgccctttgacgttctttaggggatgtccg
attactgccatagtagaccatgcggtctctcctatttctcatgacttctctttaggcccg
gccctcgtccccatgaaggtcactctaaaaaattgcatgctcgaatcttccgtaaaattc
tccgtaagttgggaagcaacctcgacatttgaagtgatcggaacaaccgaacaaagcctg
gaattagatgccaacgaagaagtcacgattcccttcgaagcgcttgtcccgaaagctgga
gttcataacttgcagatgtttcgatttgttgttcagcagcatgaacaacaacaacaacaa
caagaggatgcaacaacgtatcatctctcacagcagtggcttatacatatcgtggattct
tccttaagatgtagattccaacgacttcaacaagaactgaccttcggcttataa
DBGET
integrated database retrieval system
