Fragilariopsis cylindrus: FRACYDRAFT_244526
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Entry
FRACYDRAFT_244526 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_244526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_244526
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FRACYDRAFT_244526
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
OEU12264
JGI:
244526
UniProt:
A0A1E7F2B1
LinkDB
All DBs
Position
Unknown
AA seq
340 aa
AA seq
DB search
MTSSSPPIQPLPKSSSFQEYLDIPSRAGPLVQCLDPRAHVNEFWEQNTRPDGRLFAQGRP
TKVVYGMLKHSAGSALVQQQRQIVESQNDGGGSSDGSGGTKILAATTFNIGQPSPEQPDE
GEVVVQVSGTGGRNVGADSRSQQQQHHWDVLQSWLQRTLEQDENMAQSLNLLTGKACLRL
VISVIVLEDNGNVKDTALLACMAAWKDTRLPIIGKDLIDNGKLWWKQSGGPITSIDNSYN
ISRDGESEEKGKENTSAGRDYRISLTMGIWKDPSNQTHLLADPSNLEERFLEGSITIVVS
IVTGKLQVDYTGKVPLAANQLALASKLAIGRKSEVEFLLR
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtcatctccaccgatccaaccattaccaaaatcttcttcctttcaagaatat
ttggacatccctagtcgtgctggaccactggtccagtgtctggatccgagagctcatgtg
aatgaattttgggaacaaaacacaaggcctgatggtcgcctttttgcccaaggtcgaccc
acaaaagttgtttacggaatgctaaaacattcggcgggatcagctttagtgcagcaacag
cgtcagatcgtcgaatctcaaaatgacggcggaggcagtagtgatggtagcggtggtacc
aaaatattagccgctacgacctttaacatcggtcaaccatcaccagagcaaccagacgag
ggggaagtggtagttcaagtgagcggtacgggagggagaaatgtcggtgccgattccaga
tcacaacagcagcagcaccattgggatgtattacaatcctggctgcaacgaacacttgaa
caggacgaaaatatggcgcaatcattaaatctattgacgggtaaggcttgccttcgattg
gtgatttcagttatagtcctggaagataacggaaatgtgaaggacacagcgctactggcg
tgcatggcagcgtggaaggatacacgtctgccgataattggcaaggatttaatagataac
ggtaaattgtggtggaagcagtccgggggtcctatcacgtctattgataactcatataat
atttcaagagatggagagagcgaagagaagggtaaagaaaatacatctgctggacgtgat
tatcgaatctctctcacgatgggaatatggaaagatccgtcaaatcaaactcatctttta
gctgatcctagtaatttagaggaacgatttttggaagggagtattacaattgtagtcagt
atagtcacaggaaagctgcaagtcgattacactggtaaggtcccattggcagcgaaccag
ctggcgcttgcatcaaaattggcaattggccgaaaatcagaagtcgaatttttactaaga
tga
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integrated database retrieval system
