Fragilariopsis cylindrus: FRACYDRAFT_246181
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Entry
FRACYDRAFT_246181 CDS
T04784
Name
(GenBank) Not3-domain-containing protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_246181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_246181
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FRACYDRAFT_246181
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
FRACYDRAFT_246181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
PAT1
Motif
Other DBs
NCBI-ProteinID:
OEU11078
JGI:
246181
UniProt:
A0A1E7EYI7
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSNARKLQTEIDRVMKKVDEGVELFDEIWEKVYSAEQQNQKEKYEMDLKKEIKKLQRLRD
QIKSWIGSSDVKDKEPLVDARKLIETKMEAFKYCEKETKTKTYSKEGLMKAEKLTPEDIA
KLETTKWISEIIEKFMEVIEERDLEVEKLSAGRGKKTNKNLIDECNNFLQMHKYHLMKLE
GITRLVNNDVLDVDVVDPIREDLEYYLDSYEEEDYQQAYDEDFFYEALGLDELQVINVDH
VTQAETEKLKLATQAGSDSNQSGSQSGGKGNKGNKGDKNNNNNYGAIDESDTRSKGSDKG
NKKSGSGKAKSASSMVPITIGRARKGGSKSTVRTSSKRDGDDDDDDSTHGNTPTKTIRRG
TLGSGPTPTTIPAVAMVSNTPGSSMAAILKRETEQQEKERQAKIVEQGRLRQQQQAQAAA
ALRQQQQQLQQQEQLRQQQEAQQQQLQQQRQQQEAVVAAKQQQKALQEQQQQQQQMQSQQ
QQMQSQQQQQAVSIAQQAQALRLQQEQLRQQHQAQQQQAAQAAQQQQQQMQSQNQNQVQN
QQQQQQQVAPGSGVGQQQQQQQDANSVTPGIDIVSGLNGLGITDAGSVGSSPKRNNLSSS
ASVDTGRSSLIGNNNSNNTSNTNNNNAQNGSSSGVNTAINNGILQESFATLPQSNEHDRT
NI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcacgtaaactccagaccgaaattgatcgtgtgatgaaaaaggtcgatgag
ggtgtggaattatttgatgaaatatgggaaaaagtatattccgcggaacaacaaaatcaa
aaagaaaaatatgaaatggatttaaaaaaagaaatcaaaaaattacaacgattacgggat
caaattaaatcctggatcggttcgtccgatgtgaaagataaagaacccttagttgatgca
cgtaaattaattgaaacaaaaatggaagcctttaaatattgtgaaaaagaaactaagacg
aaaacatattccaaggaagggttaatgaaagcggaaaaattaacacccgaagatatagcg
aaattagaaacgacgaaatggatttcggaaatcattgaaaaatttatggaagtcattgaa
gaacgtgatctagaagtagaaaaattatcggcgggacggggtaagaaaacaaataaaaat
ttaattgatgaatgtaataattttttacaaatgcataaatatcatttaatgaaattagaa
ggtatcacccgactggtcaataatgatgtcttagatgtcgatgtggtcgatccgatccgt
gaagatttagaatattatctagatagttatgaagaagaagattatcaacaggcctatgat
gaagattttttttatgaagcattaggattagatgaattacaagttattaatgtagatcat
gtcacacaagcggaaacagaaaaattaaaattagccacacaggcaggtagtgatagtaat
caaagtggtagtcaaagtggtggtaaaggtaataaaggtaataagggtgataagaataac
aataataattatggcgctattgatgaaagtgatacacgatccaaagggagtgataaaggt
aataaaaaatctggtagtggcaaagcaaagtcagcatcctcgatggtaccaataacaatt
ggtcgggccaggaaaggtggatccaaatcaacagtacgaacatcgagtaaacgtgacggt
gatgatgacgatgatgattccacacatggtaatacacccacaaaaacgattcgtcgtggt
acgttagggagtggtccaacaccaaccactattcctgcagttgctatggtatcaaataca
ccaggatcctctatggcagctattctgaaacgtgaaacagaacaacaagaaaaagaacgt
caagcaaagattgtggaacaaggacgtttgcgtcaacaacagcaggcacaagcagcggct
gcactccgtcaacaacagcaacagctgcaacaacaagaacagttacgtcaacaacaggag
gcacaacaacaacaactccagcagcaacgacaacaacaggaggcagttgttgctgcaaag
caacaacaaaaggctttacaagaacagcaacagcagcaacaacagatgcagtctcaacaa
caacagatgcagtctcaacagcaacagcaggcggttagtattgcacaacaagctcaagcg
ttgcgactacaacaggaacaattgcgtcaacaacatcaggcacagcaacagcaggccgca
caagctgcacaacaacagcagcagcagatgcagtctcaaaatcagaatcaagttcagaat
caacagcagcagcagcaacaagtagcacctgggtctggtgttggtcaacaacagcaacaa
caacaggatgcaaattcagttactcccggaatagatattgtttctggtttgaatggatta
ggtattacggatgctggttctgttggtagttctcctaaaaggaataatctgagtagtagt
gctagtgttgatactggcagatcgtcgttgattggtaataataacagtaacaacacttcg
aatacgaataacaataatgctcaaaatggtagcagtagtggtgttaatactgctattaac
aatggtatattacaagaatcatttgcgacattaccacaatcaaatgaacatgatcgtaca
aatatatga
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