Fragilariopsis cylindrus: FRACYDRAFT_247872
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Entry
FRACYDRAFT_247872 CDS
T04784
Symbol
Top3a_1
Name
(GenBank) prokaryotic type I DNA topoisomerase
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03440
Homologous recombination
fcy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FRACYDRAFT_247872 (Top3a_1)
03460 Fanconi anemia pathway
FRACYDRAFT_247872 (Top3a_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcy03032
]
FRACYDRAFT_247872 (Top3a_1)
03400 DNA repair and recombination proteins [BR:
fcy03400
]
FRACYDRAFT_247872 (Top3a_1)
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FRACYDRAFT_247872 (Top3a_1)
DNA replication proteins [BR:
fcy03032
]
Eukaryotic type
DNA Topoisomerases
FRACYDRAFT_247872 (Top3a_1)
DNA repair and recombination proteins [BR:
fcy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
FRACYDRAFT_247872 (Top3a_1)
FA (Fanconi anemia) pathway
FRACYDRAFT_247872 (Top3a_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Motif
Other DBs
NCBI-ProteinID:
OEU10257
JGI:
247872
UniProt:
A0A1E7EWM7
LinkDB
All DBs
Position
Unknown
AA seq
896 aa
AA seq
DB search
MVGNYNNRTRQGPPVLLNVAEKPSVARALAKVFSQMPQSREGEPMRRDAAQIFTHDNVLF
PDIFSQGNNNNNNNNNNNRTQQHQQQQQQQIRPHRMITTSVRGHLAGIDFAGEYKQWGRC
DPLELFEAPLEVTYSEDMERLRRMLANESKKVDVLVLWLDCDREGEAIADEVLQVCVDSN
RRLIPNVYRAKFSTVMDGEIKRALNTLGRINDYFVQAVKARTELDLRVGAAFTRFQTTRL
QKKFTLPGNGEGGNSVVSYGPCQFPTLGFVVERWARIETFVQDDFWFLELSLQVQPPSSG
IDGGDNRNNNARPITFTWKRQPNTATVISLEGRPKNKWRPLPLATIELQKRASRYLRIGS
ETLMKAAEQLYQNGFISYPRTETERFRPEFQHHPLIRDFASLSDAAGPYASYANQLLNEN
GYQPPRAGPNDDQAHPPITPCKVVDPNTIQDLTQQKVYILVVKHYLACCSRDAVGRETSL
TLKIASEEFTAKGLMVEQKNWLEIYHPYERWSTGQGELPHLRVGSRVIPESLVMKEGKTT
PPQPISEPELITIMDKCGIGTDATIAQHIATIQQRDYATKDNNQRFSPTKLGIALVEGYN
NMGYQLNKPDLRRETERECNLVANGQKSKDDIVGPILDKMKDCYRVATRDAHKLDQAMAR
HYSRVGTGNDTEVLQAQFSECGNCQRSMALKQERRTGNNSGGARRGGQGGRGRGNSSSEP
KKLLFCNTCQEGWMLPRGECRPKIEEGANASPVKCAICDFQVIAVARGGGYTGNGYNICP
KCYNDSPQEYSNGGGNHACFGCSHPTCALAGGNKGSEVEVFACPFCREKRIQGGKISLRK
NSRGVNNVVVLLFGYLNLSEASKFLLATKMCALDAPRNPLYGRSPSSGSLVEYLLI
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggtcggtaactataacaacaggacgcgtcagggtccgcccgttcttctcaatgtggct
gaaaaaccctcggtagctagggcgttggccaaggtctttagtcaaatgcctcaatcacgg
gaaggtgaacctatgcgacgagatgcagcgcagatttttacacacgacaatgttcttttc
cctgacatattctctcaggggaacaacaataacaataacaacaacaataacaatcgtaca
caacaacatcagcagcaacaacaacaacaaattcgtccacatcggatgatcacgacatca
gttagggggcatttagcggggattgattttgctggtgaatacaaacaatggggacgatgt
gatccgcttgagttgttcgaggcacctctcgaggtcacttacagtgaagatatggaacgc
cttcgtcggatgttagcgaatgaatcgaagaaggttgacgtactagtattgtggctcgat
tgtgatcgtgagggggaagcgatcgccgatgaggtactacaagtttgtgtcgattcaaat
cgaagattaatacctaacgtttacagagcgaaattctctactgtaatggacggtgaaatt
aaacgagcattaaatacactaggacggattaatgattatttcgtacaggcggtgaaagcg
aggacggaacttgatttacgcgtaggtgcagcatttactcggtttcaaacgactcggtta
caaaaaaaatttactttaccgggaaatggggagggaggaaatagtgttgttagttacggg
ccgtgtcaatttcccaccttaggatttgttgtggaacgatgggctagaattgaaacattc
gttcaggatgatttctggttcttagaattatcgttacaggtacaaccaccatcttcgggg
atagatggtggtgataatcgtaacaataacgcccgtccgattacatttacttggaaacgt
caacctaacacggcaactgtgataagtctcgaaggaagacctaaaaataagtggaggcca
ctccctttagcaacaattgaattacaaaaacgagcttctcggtatttgcgtatcggttcg
gaaacactcatgaaagcggcagaacagttgtaccaaaatggatttattagttatcctaga
accgaaacagaacggtttcgaccagagttccaacatcaccctttgatccgggactttgcc
agtctaagcgatgcagccggtccgtatgcatcatacgctaaccaactattgaacgagaat
ggataccaaccacctagagcaggtccaaacgacgatcaagcccatccaccgatcaccccc
tgtaaggtagtcgatccgaatacaatacaagatcttacgcaacagaaggtctacatcctc
gtggtcaaacattatttggcgtgttgttcgagggatgcagtaggacgagaaaccagtctc
actctaaaaattgcatcggaagaatttaccgctaaaggtcttatggtcgaacaaaaaaat
tggctagagatctaccatccgtatgaacgttggtcgacaggacaaggagaactacctcac
ttgagggtcgggagccgtgtcataccggaatcgctcgtgatgaaggagggaaagacgaca
cctcctcagcccatttcggaaccagaactcatcaccatcatggataaatgtggcattgga
actgatgcgaccatagctcaacatatcgccactattcaacagcgggattatgctaccaag
gacaacaaccaacgattctcacctacaaaattggggatcgcgttagtcgaaggatacaac
aacatgggatatcaactcaacaaaccggatttacgtagagaaactgagagagaatgcaac
cttgtggcgaatggacaaaaatcaaaggatgatattgtcggaccgatactagataaaatg
aaagattgttatcgcgtggctacaagggatgcacacaaactcgatcaagcgatggccagg
cactattcacgggtaggaactggaaatgacacagaagtattacaagctcaattcagtgag
tgtggtaattgtcaacgttcgatggcactgaagcaagaacgacgaaccggcaataattca
ggaggggcacgacgagggggccaaggaggaagaggaagagggaatagtagctccgaacct
aaaaagctattattctgtaatacatgtcaagaaggatggatgttgccccgcggagaatgc
cgtccaaagatagaggaaggagccaatgcatctcccgtgaaatgtgccatatgtgacttt
caagtaattgccgttgccagggggggtggctacacgggtaacgggtacaatatctgtcca
aaatgctacaatgactcaccacaagaatattcgaatggtggagggaatcatgcctgcttt
ggttgttcccatccaacgtgtgcacttgccggtggaaataaaggcagtgaagtcgaggtg
tttgcttgtccattttgccgagaaaagagaatccagggcggaaagatctcactgcgtaaa
aactctcggggggtcaacaacgttgtagttttactatttggttacctaaacctgtcagaa
gcatcgaagttcctcctggcgacgaaaatgtgtgcactcgatgctccacgcaatccgctg
tacggaagatctccttcttctggaagcctggtggagtacctcctcatctag
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integrated database retrieval system
