Fragilariopsis cylindrus: FRACYDRAFT_251136
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Entry
FRACYDRAFT_251136 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03013
Nucleocytoplasmic transport
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_251136
09122 Translation
03013 Nucleocytoplasmic transport
FRACYDRAFT_251136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_251136
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_251136
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
FRACYDRAFT_251136
Spliceosome [BR:
fcy03041
]
Complex C
Other components
EJC/TREX
FRACYDRAFT_251136
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
FRACYDRAFT_251136
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
BIG2_C
Motif
Other DBs
NCBI-ProteinID:
OEU07331
JGI:
251136
UniProt:
A0A1E7EN47
LinkDB
All DBs
Position
Unknown
AA seq
1540 aa
AA seq
DB search
MELESEAAAATTQQHQQEELPDPTALEVVAAADNEEECQRLILRVLDYGTNNDTGDDISL
LSNRTKETIQWLESSITAVVESSSSSSSSAAFELIEDVLVDCLWLCGSKSISLPWNATTA
TTTEQKFHPTVQALVEISRALLLLWNTLTTSFSEQTQLARKLQENWFPVLLEAVNLVNND
VGSSANSNGAGNAADDLMKRLKQYNTITNYKQQKYNLLQEESEGYSKILQYLCHHCSGSD
NNDDNDNDDKKLIYLWQLVGTFELDPSRVIDLCLDVLESNLFGKKMNGSSSSSSSSIEIA
DVANSLPNITKGIRWLLDVISECSSDKIPALMRFKIENINNNNATTNDSSTSSSSSSLLK
TVAFLVRENKMDLRTFMEDYFEPSLGPNIDIAYEIYRKKERGRVVALSRVSLSGNNGSKE
DPKQIELANKLKLAMGTLTLNNDIDKDNGDSNNDTATTTTITTTDGGNGQILSLLLILIR
WGEWELVKPMLSSSLWSKLCCLMPESFGSVFLDVTEERIKVDATSSTPKLNKGITNNTAS
LSHENDADVVSAIQGLVRAVRSISDPLSCVIQSGSIASRPVLFCHICRYLRALLTDIIHE
ENDTSGNTTTINTIDSVPKEVFSFLDTFLVPSLSLFPSNPAISTELFSVLKILSYEIRYK
LYEGWEGSGLEKAGLFGGAAGGTKPLPNVESEMVAGKAVRYALKRLSKDNIRDMSRQLAK
TTHSHPLVVYATILSQIESYDNMVEVMVEAQRFVNPLGLDVLSYCMLGRLSGTSGGVNRS
RLKEDGVHVSQWLQSLEAFAGEFYKGRPFVEFRGLVFYLMRRLKDGNVMELGMLRTLLEV
AGGYSFADYSPAASLNEVQLDGRSGSVTLKRETMSFGIVEKTNPVAANRIRDVLQTDGLG
VSMLILIAQARDRIIFDSTKGAFKEVKLVGNLYDTCQVVMSILLEFLTDDDGKQVDGNHS
STPVAMYSKFLPSIEDLQSIYGLDMATVWLLCRPSVKTALQMDSESLETSCLKRFELTED
VRKSYSDSLPESVWSLLTPKLFEFFYMNNMSDIYCPEGLLLSEINRTEKEVTRIKGLKSP
AKNESDELERLAAVSKQLDNDMKYQNKRVESTLNDLNKEKVNFFASEEISREAAKAFLIY
CIYPRTTQSPDDAMYSSAVAFRLHKIWTPGFSIMHYLDELISIVSGALFGVTEAEAANLA
ILLYQTLKVVNQWRHEDGLYDKEVLGKPGSSMENNEDGETTVGPVSHKDFIQLYNKWQYS
LGAALIGCLKSAEYIHTRTGLVVLSRLVDIFPTGPSLGNKLLQVLEPLQDESSSRPDIRA
SASAYGMMLAKARDDGKWVEEDENAAKKRAEKEKEAAEERKKRIEKSFRELERDSEKITA
QIGTDDRRDRPRGGLARDNHHNDRRPDSGRQAPGARDVNSNNRSGSDFTRMESGEVNGRD
RDRRTARDTDDDRRRDGGDNMQRGGRDDDKWRRDGPPPRNSKRSRDSSPIDDRNSERSNI
KRPRTEEYNHSSRQGGNSRSPEPPSTRNGRSSRRGNNSRR
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atggagttggagtcggaggcggcggcggcgacaacgcaacaacatcaacaagaagaactt
cccgatccaactgctttggaagtagtcgctgcagctgataacgaggaagaatgtcaacga
ttgatacttcgcgtgctcgattatggaacgaataatgatactggtgatgatatatcacta
ttatcaaatagaacaaaagaaaccatccaatggttagagagcagcatcaccgctgtagta
gaatcatcatcgtcgtcgtcatcatcagcagcttttgagttgatagaagatgttttggta
gactgtctttggttatgcggatcaaaatcaatatccttaccatggaatgctactactgct
actactactgaacaaaaatttcatccaacggtgcaggctttggtcgaaatttcacgtgct
ttgttgttgttatggaatactttgacgacatcattctccgagcaaacacaactcgctagg
aaacttcaagaaaattggttcccagttttattagaggctgttaatcttgtcaataatgac
gtaggaagtagtgcaaattcgaatggtgcaggtaacgctgctgatgatttaatgaaacgg
ttgaaacaatacaacaccattacgaattacaaacaacagaaatataatttgttacaagaa
gaatcggagggatattcaaaaatattacaatatttatgtcatcattgttctggtagtgac
aacaacgacgataatgataatgatgacaaaaagttaatatacctgtggcaactagtagga
actttcgaattggatcctagtagagttatagatttatgtttggacgtattggaatcaaac
ctttttgggaagaagatgaacggtagtagtagtagtagtagtagtagtatcgaaattgct
gatgtcgcaaattcgttaccgaacattactaaagggatccgttggttgttggacgtcata
tctgaatgctcgtcggataaaattcccgcattgatgagattcaagattgaaaacattaac
aataataatgctactactaatgattcctcaacatcatcatcctcatcctcgttgttgaaa
actgtagcgtttttggttcgtgaaaataaaatggatcttcggacattcatggaggattat
ttcgaaccgtcgttgggaccaaatatagatattgcatatgaaatatatcgaaaaaaagaa
cgtggacgggttgttgccttgtcaagagttagtttgtctggaaacaacggtagtaaagaa
gatccgaaacaaatagaactcgcaaataaattgaaattggcgatgggtacgttgacactt
aataacgacatcgataaagataacggtgacagtaacaacgatactgctactactactact
attactactactgatggaggcaacgggcagatcttgtcgttgttattgattctaattcga
tggggggaatgggagttagtcaaaccaatgttatcatcctcgttatggagtaaattgtgt
tgcttaatgccagaatcctttggatcggtatttctcgacgtcaccgaagaacgtatcaag
gtagatgctacgagtagtactccaaaactgaacaaagggatcacaaacaataccgcttct
ctttctcatgagaacgatgcagacgttgtatccgctatccagggtttggtccgcgccgtt
agatctatttcagatcctctctcctgtgtcattcagtctggttctatagcatctcggcct
gttttgttctgtcatatctgtcgttatttacgggctcttttgacagatatcattcacgaa
gagaacgataccagcggcaacaccaccaccatcaacaccatcgattccgtgcccaaagag
gtattttcatttctagacacatttttggttccgtcgctgtctctgttcccatcgaatcct
gctatctcaaccgagttattttctgtgctgaagatattatcgtatgagatccgctataag
ctttatgaaggttgggaaggatctggcttagaaaaagctggactatttggaggtgcggct
ggaggaactaaacccctgccgaatgtagaatccgaaatggttgcagggaaagctgttcgg
tacgcgttgaaacggctttcaaaagacaacatcagagatatgagcagacaactcgcgaaa
acaacccattcacatccgttggtagtgtacgcgactattttgagccaaattgaaagctat
gataatatggtagaagtgatggttgaggcacaaagattcgtaaatccgttagggcttgac
gtactcagttactgcatgttgggacggctaagcggaacgtcaggtggagtcaaccgtagt
cgtttgaaagaggacggcgtacacgtatcgcaatggttacaatcactggaagcatttgcc
ggggaattctacaagggtagaccatttgttgaatttcgtggcttggtattttatctgatg
cgaagactgaaggatggtaatgtcatggagttaggtatgctacgaacattgctggaagtt
gcgggtggttacagcttcgccgactattctcctgctgcatcattgaacgaagtgcaattg
gatggaagatccggatcggtgacattgaaacgggaaacaatgtccttcggtatcgtagaa
aaaaccaatccagttgctgctaatcgtatacgtgatgtcctacaaacagacggcttaggg
gtttctatgctgattcttatagctcaggctagagataggataatattcgattctacaaaa
ggagctttcaaggaagtgaaacttgttgggaacctatacgatacttgccaggtagtcatg
tccattctattggaattcttgacggacgacgatggtaaacaagtcgatggaaatcattca
agtacgcccgtagcaatgtattccaagttcctgccttccatagaagatcttcaatccatt
tatggattggatatggctactgtctggctcttatgtcgtccctctgtaaaaacagcgcta
cagatggattccgagagtttggaaacgtcatgtttaaagcgttttgagcttacagaggat
gttcggaaatcatattcggactctttaccagaatctgtatggtctttgctcacccccaaa
cttttcgagtttttctacatgaataacatgtctgacatttattgtccggagggactatta
ttatctgaaataaatcggactgagaaagaagtaacgcgtatcaaaggactaaaatccccc
gccaaaaatgaatccgacgaacttgaacgccttgcagccgtttcgaaacagctagataat
gatatgaagtaccaaaataagcgcgtcgaatctacattgaatgatttgaataaagaaaaa
gtaaacttctttgcctccgaagaaatctcccgggaggcggccaaagcgttcttgatttat
tgcatctatccaaggactacgcaaagtcctgacgatgctatgtattcttctgctgttgcc
ttccgacttcacaagatttggaccccaggctttagcatcatgcactaccttgatgaattg
atctcaatagtctctggggcattgtttggagttactgaggccgaagctgcgaatttagcc
atactgctttatcaaactttgaaagttgtgaatcaatggagacacgaggacggcctttat
gacaaagaagtccttggtaagcccggatcttctatggaaaacaacgaagatggcgaaacg
actgttggtcctgtctcccataaggattttatccaactatacaataaatggcagtactcg
ctcggagctgccttgattggatgtctgaaatcggcagaatacatacatactcgtactgga
cttgtagttctatctaggctggttgacatattcccaactggcccatcgctgggaaacaaa
cttctgcaagttctcgaaccccttcaagacgaaagtagctcgcgtcctgatattagagct
tcggcaagcgcttacggaatgatgttggcaaaagcacgagacgatggaaaatgggtcgag
gaagacgagaatgctgcgaagaagagggcggaaaaagaaaaagaagctgcagaggaaaga
aagaaaaggatcgagaaatcatttcgagaactagaacgagacagcgaaaaaattacagct
cagattggtactgacgaccgacgcgatcgtccgcgaggtggactggcgagggataaccat
cataatgaccgacgaccggatagtgggagacaagcaccaggagctagagatgttaatagt
aacaatcgatctggtagcgactttacgagaatggaatcgggtgaggtcaatgggagggat
cgcgaccgtcgtaccgcaagagacaccgacgacgatagacgtagagatggcggagataat
atgcaacgaggaggtcgggatgacgataagtggcgacgtgacggccctcccccaagaaat
tcaaagaggagcagagattcttctcccattgatgaccgcaattcggaacgatcaaatatc
aaaagacctcgcacggaagaatacaatcactcgtcacgacagggtggtaacagtagaagt
cccgagccaccatctacaagaaacggaaggtcgtcccgcagaggaaacaatagtagaagg
tag
DBGET
integrated database retrieval system
