KEGG   Fragilariopsis cylindrus: FRACYDRAFT_257317
Entry
FRACYDRAFT_257317 CDS       T04784                                 
Name
(GenBank) hypothetical protein
  KO
K12607  CCR4-NOT transcription complex subunit 10
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FRACYDRAFT_257317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_257317
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     FRACYDRAFT_257317
SSDB
Motif
Pfam: TPR_12 TPR_1
Other DBs
NCBI-ProteinID: OEU05933
JGI: 257317
UniProt: A0A1E7EK57
LinkDB
Position
Unknown
AA seq 831 aa
MGPREVYDVSGDSEAAMRLLVSGNNNNNGSSSNNEQQIPQDEYNCLLLTALATTTTSTNS
TSTSTNENSLLDESLEDARKVVLNSYSTSNQLPPKRRKIIEEWILAYNRGLVLLSKGKVE
ESIRESWAYLQPIIVTKEASSSGSSSSQQQQQPPLELACRMGFLILEGMLTLYPTRIHGR
TAVTSNIHNYDKGSSFDLGLLDEVLSWLTENVENTKVPQPTTASDNNNNGNSNNQDGNNT
TLSPDPQLKFLLSLYNSRVDFFERTTGDSTTRDKHMRSARKELKQAMEIFQHKLRPSSSQ
SASSGGGNNDAISLASVSSYSEEVAAATAGHNNNNSSSSNNNNNNDASSVGKQGNSPTPD
TTSSSSTPLPQPVVSSSAFNNSNRNLSRILQGQNQVALNLKANSEQLKGNVKKSLILCGE
AQSFNNHTSVNPTSSGTSSSNSSYYDAIHQNNLGIVYETSGKSHLALHAFSKAVRSANSC
SNSNSNARFESDGTAHPDVTLHVLNNAAVCALKSRNYVAAYECYAIGLATSNSWRKRPRT
WLRLSEACIGLNTKVKKERAEGATQCSKVEVDGKASGVLLTDTIKYNDDKIVKALPALAS
SEDLKEIRNHALMRARMALEKAIELFGEDGANPDDLALQSARLSLAYVSLEERNFKKALK
YSMLVLEGDDEVNSNETTKERTDDDDNAEAVRRTMIKRHKATARMYASEAKASLGDAMAS
MKILVGDGKDDAFDRLSSDLGGVTIGMASGNAKAKARLAKAQTMVRCSASAASAALGNVA
ASKQLAMSAQAMENSYSPSREGTSQARKALIYCMLREGNHGAALTLLRSAR
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgggtcctcgagaagtgtatgacgtttcgggagattctgaagccgccatgcgtttgttg
gtatcaggcaataataataataacgggagcagttcaaataatgagcagcaaattcctcaa
gatgaatataattgtctcttattaacagcattagctacgacgacgacgtctacaaatagc
accagcactagcaccaatgaaaattcattgttggatgaatctctagaagatgcaagaaag
gtcgttttgaattcgtattcgacgtcgaatcaacttccaccaaaacgaagaaaaataatt
gaggaatggatccttgcctacaatcgtggattagttctattatcgaagggtaaagttgaa
gaatcgattcgggaatcatgggcgtacctacaaccaatcattgtaacgaaggaagcctca
tcatcaggatcttcttcttcgcaacagcaacagcaaccaccacttgaattggcttgcagg
atgggatttttaattttagaaggaatgttaactctttatcctactcgaatccatggacga
actgctgttaccagcaacatacacaattacgacaaaggatcatcattcgatttgggatta
ttagacgaggtgctatcgtggttaacggaaaatgtagaaaataccaaagtaccacaacca
acgacggcatcggataacaacaataatggtaacagcaacaaccaggatggtaataataca
actctctcaccggacccacaattgaaattcttattgagcctgtacaactcacgggttgat
ttttttgaacggactacgggagattctactactcgtgataaacatatgagatcggcacga
aaagaactgaaacaggcaatggaaatatttcaacataagttacgaccatcctcatctcag
tcagcaagttctggaggagggaacaacgacgcgatttcattggcatcagtgtcgtcatat
tccgaagaagtagcagctgcaacggctggtcacaataataataatagtagtagtagtaac
aataataacaacaacgatgcgagcagcgtcgggaagcagggtaatagtccaacccctgat
acgacatcatcttcatcaactcccttaccccaaccagttgtgtcatcatctgcttttaac
aacagcaacaggaatttatctcgcatccttcaagggcagaaccaagtggcacttaacctt
aaggctaattcggaacaactcaaggggaacgtaaaaaagtcgctcatcctttgcggggaa
gctcaatcctttaacaaccacaccagcgtgaatcctactagcagtggaacaagcagcagt
aatagcagttattatgatgcaattcatcaaaataatcttggaattgtttacgaaaccagt
ggtaaatcacatttagcattgcatgcattttcaaaggccgtccggtccgccaatagttgc
agtaatagtaatagtaacgcacgattcgaatcggacggaacggcacatcctgatgtaaca
ctacacgtattaaacaatgccgccgtttgtgctctcaaatcaaggaattacgtagcagca
tatgaatgttatgctattggattagcaacatcaaattcatggaggaaacgaccaagaacc
tggttgcgtttatcggaagcttgtatcggtttaaataccaaggtaaagaaagaacgggct
gaaggcgccacccagtgttctaaagtggaagttgatgggaaagcaagtggtgttcttttg
acggatacgatcaaatacaacgacgataagattgtgaaggctcttccagctttagcttcc
tctgaagatttgaaagaaattcggaatcacgcattaatgagagctcgaatggctctagaa
aaggcaatagaactattcggtgaggatggtgcaaaccccgacgatcttgcgctgcagtcc
gcgagactatctttggcatacgtaagtttagaagaaagaaactttaaaaaggcattgaaa
tattcaatgttagtactggagggtgatgatgaagtaaattcgaacgagacaacgaaggag
cgaacagacgacgatgacaacgcagaagctgtccgacgtaccatgattaagcgtcataag
gccacggcgcggatgtacgcatccgaggccaaagcttccttaggtgacgcaatggcgtct
atgaaaattctagtgggggatggtaaagacgatgcctttgatcgattgtcgtccgatttg
ggtggtgtaacgattggtatggcatctggtaacgcaaaggcaaaggcacgtttggctaag
gctcaaacgatggtccgttgttcggcatccgctgcatctgcggctttggggaacgtcgcc
gcctctaagcaattggccatgtcggctcaagcaatggaaaatagttattctccttctcga
gaggggacctctcaagcacgcaaggctcttatttattgtatgctccgcgagggaaaccac
ggcgcagcactgaccctgttacggtctgctcgttga

DBGET integrated database retrieval system