Fragilariopsis cylindrus: FRACYDRAFT_257317
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Entry
FRACYDRAFT_257317 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_257317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_257317
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
FRACYDRAFT_257317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_1
Motif
Other DBs
NCBI-ProteinID:
OEU05933
JGI:
257317
UniProt:
A0A1E7EK57
LinkDB
All DBs
Position
Unknown
AA seq
831 aa
AA seq
DB search
MGPREVYDVSGDSEAAMRLLVSGNNNNNGSSSNNEQQIPQDEYNCLLLTALATTTTSTNS
TSTSTNENSLLDESLEDARKVVLNSYSTSNQLPPKRRKIIEEWILAYNRGLVLLSKGKVE
ESIRESWAYLQPIIVTKEASSSGSSSSQQQQQPPLELACRMGFLILEGMLTLYPTRIHGR
TAVTSNIHNYDKGSSFDLGLLDEVLSWLTENVENTKVPQPTTASDNNNNGNSNNQDGNNT
TLSPDPQLKFLLSLYNSRVDFFERTTGDSTTRDKHMRSARKELKQAMEIFQHKLRPSSSQ
SASSGGGNNDAISLASVSSYSEEVAAATAGHNNNNSSSSNNNNNNDASSVGKQGNSPTPD
TTSSSSTPLPQPVVSSSAFNNSNRNLSRILQGQNQVALNLKANSEQLKGNVKKSLILCGE
AQSFNNHTSVNPTSSGTSSSNSSYYDAIHQNNLGIVYETSGKSHLALHAFSKAVRSANSC
SNSNSNARFESDGTAHPDVTLHVLNNAAVCALKSRNYVAAYECYAIGLATSNSWRKRPRT
WLRLSEACIGLNTKVKKERAEGATQCSKVEVDGKASGVLLTDTIKYNDDKIVKALPALAS
SEDLKEIRNHALMRARMALEKAIELFGEDGANPDDLALQSARLSLAYVSLEERNFKKALK
YSMLVLEGDDEVNSNETTKERTDDDDNAEAVRRTMIKRHKATARMYASEAKASLGDAMAS
MKILVGDGKDDAFDRLSSDLGGVTIGMASGNAKAKARLAKAQTMVRCSASAASAALGNVA
ASKQLAMSAQAMENSYSPSREGTSQARKALIYCMLREGNHGAALTLLRSAR
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctcgagaagtgtatgacgtttcgggagattctgaagccgccatgcgtttgttg
gtatcaggcaataataataataacgggagcagttcaaataatgagcagcaaattcctcaa
gatgaatataattgtctcttattaacagcattagctacgacgacgacgtctacaaatagc
accagcactagcaccaatgaaaattcattgttggatgaatctctagaagatgcaagaaag
gtcgttttgaattcgtattcgacgtcgaatcaacttccaccaaaacgaagaaaaataatt
gaggaatggatccttgcctacaatcgtggattagttctattatcgaagggtaaagttgaa
gaatcgattcgggaatcatgggcgtacctacaaccaatcattgtaacgaaggaagcctca
tcatcaggatcttcttcttcgcaacagcaacagcaaccaccacttgaattggcttgcagg
atgggatttttaattttagaaggaatgttaactctttatcctactcgaatccatggacga
actgctgttaccagcaacatacacaattacgacaaaggatcatcattcgatttgggatta
ttagacgaggtgctatcgtggttaacggaaaatgtagaaaataccaaagtaccacaacca
acgacggcatcggataacaacaataatggtaacagcaacaaccaggatggtaataataca
actctctcaccggacccacaattgaaattcttattgagcctgtacaactcacgggttgat
ttttttgaacggactacgggagattctactactcgtgataaacatatgagatcggcacga
aaagaactgaaacaggcaatggaaatatttcaacataagttacgaccatcctcatctcag
tcagcaagttctggaggagggaacaacgacgcgatttcattggcatcagtgtcgtcatat
tccgaagaagtagcagctgcaacggctggtcacaataataataatagtagtagtagtaac
aataataacaacaacgatgcgagcagcgtcgggaagcagggtaatagtccaacccctgat
acgacatcatcttcatcaactcccttaccccaaccagttgtgtcatcatctgcttttaac
aacagcaacaggaatttatctcgcatccttcaagggcagaaccaagtggcacttaacctt
aaggctaattcggaacaactcaaggggaacgtaaaaaagtcgctcatcctttgcggggaa
gctcaatcctttaacaaccacaccagcgtgaatcctactagcagtggaacaagcagcagt
aatagcagttattatgatgcaattcatcaaaataatcttggaattgtttacgaaaccagt
ggtaaatcacatttagcattgcatgcattttcaaaggccgtccggtccgccaatagttgc
agtaatagtaatagtaacgcacgattcgaatcggacggaacggcacatcctgatgtaaca
ctacacgtattaaacaatgccgccgtttgtgctctcaaatcaaggaattacgtagcagca
tatgaatgttatgctattggattagcaacatcaaattcatggaggaaacgaccaagaacc
tggttgcgtttatcggaagcttgtatcggtttaaataccaaggtaaagaaagaacgggct
gaaggcgccacccagtgttctaaagtggaagttgatgggaaagcaagtggtgttcttttg
acggatacgatcaaatacaacgacgataagattgtgaaggctcttccagctttagcttcc
tctgaagatttgaaagaaattcggaatcacgcattaatgagagctcgaatggctctagaa
aaggcaatagaactattcggtgaggatggtgcaaaccccgacgatcttgcgctgcagtcc
gcgagactatctttggcatacgtaagtttagaagaaagaaactttaaaaaggcattgaaa
tattcaatgttagtactggagggtgatgatgaagtaaattcgaacgagacaacgaaggag
cgaacagacgacgatgacaacgcagaagctgtccgacgtaccatgattaagcgtcataag
gccacggcgcggatgtacgcatccgaggccaaagcttccttaggtgacgcaatggcgtct
atgaaaattctagtgggggatggtaaagacgatgcctttgatcgattgtcgtccgatttg
ggtggtgtaacgattggtatggcatctggtaacgcaaaggcaaaggcacgtttggctaag
gctcaaacgatggtccgttgttcggcatccgctgcatctgcggctttggggaacgtcgcc
gcctctaagcaattggccatgtcggctcaagcaatggaaaatagttattctccttctcga
gaggggacctctcaagcacgcaaggctcttatttattgtatgctccgcgagggaaaccac
ggcgcagcactgaccctgttacggtctgctcgttga
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