KEGG   Fragilariopsis cylindrus: FRACYDRAFT_258662
Entry
FRACYDRAFT_258662 CDS       T04784                                 
Name
(GenBank) Sm-like ribonucleo protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03018  RNA degradation
fcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FRACYDRAFT_258662
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FRACYDRAFT_258662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_258662
   03041 Spliceosome [BR:fcy03041]
    FRACYDRAFT_258662
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FRACYDRAFT_258662
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     FRACYDRAFT_258662
Spliceosome [BR:fcy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    FRACYDRAFT_258662
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-ProteinID: OEU05687
JGI: 258662
UniProt: A0A1E7EIH0
LinkDB
Position
Unknown
AA seq 165 aa
MLPLSLLNVAAESSTPLLVELKGGDTYNGRLVSCDSWMNMNLSDVVCTSKHGDKFWKLPS
CYIRGSAIKYLRLPPDLLDTAKEKVEEDERRNKIQREQNYGGRGRGGRGRGRGRGRSDGG
RGRGGRGRSDGGRGGGRGRSGGDTSSYGGRGGGRGGGGRDSGRGN
NT seq 498 nt   +upstreamnt  +downstreamnt
atgttaccgctatcgttattgaacgttgcagctgaatcgtcgacaccgttattggttgaa
ttgaaaggtggagatacgtacaatggacgattggttagttgtgattcatggatgaacatg
aatcttagtgacgttgtttgtacatccaaacacggtgataagttttggaaattaccatcg
tgttatattcgtggttctgccataaaatatttaagattaccacccgatttattggacact
gcaaaggaaaaagttgaagaagacgaaagacgtaacaaaattcagagagaacagaattat
ggtggaagaggacgtggaggaaggggacgtgggcgtggacgtggaagaagtgatggtgga
agaggtagaggtggacgtggaagaagcgatggtggtagaggtggtggtagaggaagaagc
ggcggtgatacatcatcgtatggtggtcgtggtgggggaaggggtggtggtggccgagac
agtggtcgagggaattaa

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