Fragilariopsis cylindrus: FRACYDRAFT_260919
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Entry
FRACYDRAFT_260919 CDS
T04784
Name
(GenBank) Sec23_trunk-domain-containing protein
KO
K14007
protein transport protein SEC24
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
FRACYDRAFT_260919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fcy04131
]
FRACYDRAFT_260919
Membrane trafficking [BR:
fcy04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
FRACYDRAFT_260919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Yippee-Mis18
Motif
Other DBs
NCBI-ProteinID:
OEU17559
JGI:
260919
UniProt:
A0A1E7FHB2
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MVFPPPPPPNNSNQFRAPPPPGSGGGFAPPPPPGGNIGGGFAPPPPPGGGGGGFRAPPPP
GNGGFALLRLLGVGNMSFQPPAPPGGLAAPPQPGGQFGGPPGGPPPAPGQFQPPAPGMFQ
APGPPAGPGAPPPPSQQYQQQPPMMQGRGVPGSAPIPQPPGGMGHGMAPGLQQSHQSNVY
QENIDFNITIPERFFRLTCDKIPATNNIAMAAKVPLGGVVRPLAPCPDGEDEVDTIQPGS
AGIIRCKRCRTYVNAFVHWLEHGRSWRCNICAQVNTTPSAYFCHLDDEGFRRDRFERPEL
SKSVVEFIAPAEYMVRPPQEPTYFFVLDVSAQAVHSGMLECAANAIKRSLDDLPGGKRTK
IGFITFDNSVHYFNLAPDLAQPQMLVVSSLKELFVPLPDSLLVNLTESRTVIDTFLDSLP
EMFTKNPAPGLSCLGPALKAAFTVMKQVGGKMVVFQSVQPNLGDGSLKPRENPSLMGTGA
EVKLLRSDSEWYKDTAVEFSRQQISVDMFLFPYSYMDIASLGDLPKYSAGSLHSYVMFNL
EKDGPRFEEQVHKTLTQNTAFEAVLRTRVTKGMRITNYYGNFYIRGADLMALPNVNSDSV
FGFDLSHDGENLASNYVTVQSALLYTNGHGQRRIRVMTQAFPTTTLTSELVNSVDVFATC
NLIAKQAIDVTLKTTLDNARMRMQQICVDLIRAAKGGDRRTISGYAVPQAPQSNEDEDDS
IPTSLELFPLYTLALMKNVAFRGGTDVHPDERSQAFFNINQMWLCKSKAFIYPPLFSLHD
MEPSAGHPTEDNADDTPEESFAGRNRVLLPSALPLTIDSLSSDGIYLVDNGIEFFLWIGR
EANSNFVNSLFGVPSLENVEPVLNLDNGDEFSTQLGNIISALRDDDADPFSVSSKITVVK
EGDQHMEARFFWFMVEDRASFQGGTFSYEDFMNFVQNPNAGHGGAPPGPGGPMQGRGGPM
PPQRQQQYGQGPPPPGGPPAPMPPQQHQQYGQGPPPPGRGPMPPQQQYGGPPPPGPPAPM
QGRGPMPPQQQQFGGPPGGPPQPAYGQAPMPPQQQQYGQQPPQPAPPQQYSQQPAPPQQQ
QQYAPPPAPPKPRAQNGNARRAPPPPPRGRGPPPPPPPPPR
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttccacctcctcctccccctaataacagcaaccaatttagagcaccaccaccg
ccaggaagcggcggaggtttcgcaccgcccccacctcccggagggaatatcggcggaggt
tttgcaccaccaccaccacccggtggtggtggtggtggctttcgggctccaccaccacct
ggaaatggaggattcgcactcctccgcctcctcggagtaggaaacatgtcattccagcct
cctgcgccaccaggtggactcgcagctcctcctcaaccgggtggtcaattcgggggtcca
ccaggtggtccacctccagcaccgggtcaattccaaccacctgctccaggaatgttccag
gcacctggtcctcctgcaggacctggggcaccaccgcccccatcacagcaatatcagcag
caaccaccgatgatgcaaggacgtggtgttccgggttcggctcctatacctcaaccaccg
ggaggcatgggacatggaatggcacctggtctacaacaatcgcatcaatcaaatgtttac
caggaaaatatcgatttcaatataactatacccgaacgattctttcgattgacatgtgac
aaaattcctgcaaccaacaatatcgctatggcagcaaaagtgccactcggtggggtcgtc
cgtccactggcaccgtgtcctgacggtgaagacgaagtcgatacgatacaaccaggtagc
gctggaattattcgatgcaaacgttgccgtacctatgtcaatgcatttgttcattggtta
gagcatggtagaagttggaggtgtaatatttgtgctcaggtgaataccaccccctcagcc
tatttctgtcatttggatgacgaaggatttcgtcgtgatcgttttgaacgtcccgaatta
tccaaaagtgttgttgaattcatcgccccggctgagtacatggtccgtccaccgcaggaa
cctacatactttttcgttttggatgtcagcgcccaggctgttcatagtgggatgctcgaa
tgtgccgcaaatgctatcaaacgtagtttggatgatcttcctggtggaaagcggacgaag
attgggttcatcacctttgataattcggtccattatttcaatctagccccagatttagcg
cagcctcagatgttggtcgtttcatcgttgaaagaactttttgttcccctcccggacagt
cttctagttaatttgactgaatctaggacagtcattgatacgttcttagacagtctaccc
gaaatgttcactaaaaatccagcaccaggactatcctgtttgggtcctgcgctgaaggct
gcatttactgtcatgaaacaagtcggcggtaaaatggtcgtgtttcaatcagttcaacca
aatctaggagatggttccctcaaacctagggaaaatccatcattaatgggaacgggtgct
gaagttaaactcttgcggtctgatagtgaatggtacaaggatacggcggttgaatttagt
cgacaacaaattagtgtagatatgtttttgttcccatattcttacatggatatagcgtcc
ttgggagacttgcctaaatattctgcaggatcacttcattcgtatgtgatgttcaatctt
gaaaaagatggtccgcgttttgaggaacaagtacacaagacgctcacacaaaacacagct
tttgaggccgtcttgagaacccgtgtaacgaaggggatgcgaataaccaactattatgga
aacttttatattagaggagcagatttaatggcgcttcctaacgttaattccgattcggta
ttcggttttgatctatctcacgatggagaaaatttagccagcaactacgtgacagttcag
tctgcactcctgtacacaaatggacatggtcagcgtcgtattcgcgtcatgactcaggca
ttcccaaccactacattgacctctgaattggtcaattcggttgacgttttcgccacttgt
aatctgatagcgaaacaagctatcgatgtaacattgaaaacaacattggacaacgctcga
atgcgaatgcaacaaatttgtgtggatttaattcgtgctgctaaaggtggtgataggcga
acgatttctggatatgctgtcccacaagctcctcagtcaaacgaagatgaagatgattct
atacccacatctttggagcttttccccttgtataccctggctttgatgaagaatgttgca
ttccgtggaggaactgatgttcatcccgacgagcgtagccaagcattttttaatatcaat
caaatgtggctttgtaaatcgaaggccttcatttatccaccactcttctccttgcacgat
atggaaccaagtgctggtcatcctacagaagataacgcagatgacacaccggaggagtca
ttcgctggtcggaatcgtgtcttgcttcccagtgcattgcccttaactattgattcgcta
tctagtgatggtatttatcttgtagacaatggtatcgaattcttcctttggataggtaga
gaagctaattcaaactttgttaattcattgtttggtgttccttctcttgaaaatgttgaa
cctgtactgaatttagataatggagatgagttctcgacacaactgggaaatattatctca
gccttgagagacgacgacgcggatccattttctgtcagctcaaagataactgttgtgaag
gagggcgatcaacacatggaagctcgtttcttctggttcatggtagaagatagagcctcg
tttcagggtggaacgtttagttacgaagatttcatgaatttcgtccagaatccaaacgct
ggacatggcggtgctcctccaggaccaggcggaccgatgcaaggacgtggtggtcctatg
ccaccacagcggcaacaacaatatggacaaggtccaccacctccaggtggaccaccagca
cctatgccaccgcagcaacaccaacaatatggacaaggaccaccacctccagggcgtggt
cctatgccaccgcaacaacagtacggaggcccgccacctccaggaccacctgcaccaatg
caagggcgtggtcctatgccaccgcagcagcagcaattcgggggtccaccaggtggtcct
cctcaaccagcttacgggcaagctcctatgccaccacagcaacaacaatatggccaacag
cctcctcaacctgcaccacctcaacaatatagccaacagcctgctccacctcagcagcaa
caacaatatgctcctccaccagccccaccgaagccccgtgcacagaatggaaatgcacga
cgtgcaccgccgccgcctccaagaggaagaggaccacctccaccgccgccaccaccacct
cgataa
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