Fragilariopsis cylindrus: FRACYDRAFT_268895
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Entry
FRACYDRAFT_268895 CDS
T04784
Name
(GenBank) RNA-binding domain-containing protein
KO
K12876
RNA-binding protein 8A
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03013
Nucleocytoplasmic transport
fcy03015
mRNA surveillance pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_268895
09122 Translation
03013 Nucleocytoplasmic transport
FRACYDRAFT_268895
03015 mRNA surveillance pathway
FRACYDRAFT_268895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_268895
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_268895
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FRACYDRAFT_268895
Spliceosome [BR:
fcy03041
]
Complex C
Other components
EJC/TREX
FRACYDRAFT_268895
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RRM_occluded
DUF4904
Motif
Other DBs
NCBI-ProteinID:
OEU16144
JGI:
268895
UniProt:
A0A1E7FDC1
LinkDB
All DBs
Position
Unknown
AA seq
115 aa
AA seq
DB search
MKASNHHSSSISSSHDNQMPPPPPVVSGPLRSVEGWVTFVTGVNEEAIEEDIREAFCDYG
RIKSIVLNADRKTGLAKGYALVEYMERNEAQDAINALHGKSLMGKKIGVSFAFGY
NT seq
348 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcttcaaaccatcacagcagcagtatcagtagcagtcacgacaatcaaatgcct
ccacctccacctgtagtatcgggtccactacggagtgtagaaggctgggtgacgttcgtt
acgggagttaatgaggaagctatagaagaagatatccgtgaagcattttgtgattatgga
cgaatcaaatctattgttttaaatgctgatcgaaaaacaggccttgccaaaggttatgca
ttggtagaatacatggaacgaaatgaggcacaagacgcaataaatgcattacatgggaaa
tcactgatgggaaaaaaaatcggtgtaagttttgcttttggttattga
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integrated database retrieval system
