Fragilariopsis cylindrus: FRACYDRAFT_269103
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Entry
FRACYDRAFT_269103 CDS
T04784
Name
(GenBank) putative small nuclear ribonucleo protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_269103
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_269103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_269103
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_269103
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FRACYDRAFT_269103
mRNA degradation factors
5'-3' decay
Lsm complex
FRACYDRAFT_269103
Spliceosome [BR:
fcy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
FRACYDRAFT_269103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-ProteinID:
OEU16789
JGI:
269103
UniProt:
A0A1E7FF41
LinkDB
All DBs
Position
Unknown
AA seq
106 aa
AA seq
DB search
MSRPPRKESILELAKLMDATVHVKCLGGREIEGTLKGYDELVNLVLEDCEEYLRDPEDHE
KITDKKRKLGLVVVRGTQVSLVSPQEGVEEIANPFLVAEEEEEVLG
NT seq
321 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacctccaagaaaggaaagtatccttgaacttgccaagttaatggatgcgaca
gttcacgtgaaatgcttaggtggacgagaaattgagggaacattaaagggatatgatgaa
ttagtaaatcttgtattagaagattgtgaagaatatttaagagatccagaggatcatgaa
aaaataacagataagaaaagaaaacttggtttggtggtcgtacgtggtactcaagtatca
cttgtttctccacaggagggtgtggaagagattgcaaatcctttcctggtggcagaagag
gaggaggaggtattgggatag
DBGET
integrated database retrieval system
