Fragilariopsis cylindrus: FRACYDRAFT_274747
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Entry
FRACYDRAFT_274747 CDS
T04784
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03013
Nucleocytoplasmic transport
fcy03015
mRNA surveillance pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_274747
09122 Translation
03013 Nucleocytoplasmic transport
FRACYDRAFT_274747
03015 mRNA surveillance pathway
FRACYDRAFT_274747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_274747
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_274747
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRACYDRAFT_274747
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FRACYDRAFT_274747
Spliceosome [BR:
fcy03041
]
Complex C
Other components
EJC/TREX
FRACYDRAFT_274747
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
FRACYDRAFT_274747
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
OEU18337
JGI:
274747
UniProt:
A0A1E7FJL2
LinkDB
All DBs
Position
Unknown
AA seq
411 aa
AA seq
DB search
MATENEDELVDYDEEEEVAVGDKATAGEEAKETKKGHYVGIHASGFKDFLLKPELLRAIV
DAGFEHPSEVQHETIPQAVLGGDIICQAKSGMGKTAVFTLATLQQANVEEAKVSVLVICH
TRELAFQIAHEYERFSKYLPSVKTAVFYGGVPVKQNLEILKNDCPHIVVGTPGRILALAR
DKALNLGNIKHFVLDECDRVLESLDMRRDIQEIFRLTPHEKQVMLFSATLAKEVRPVCKK
FFDVAWLALYYSKLAEAEKNRKLNDLLDALEFNQVVIFVSKVARAKELNRLLTECNFPSI
CIHGGMKQEERIKQYKSFKDFNARILVATDLFGRGIDIERVNVVINYDFPDESDQFLHRV
GRAGRFGTKGIAISFISSEGDQEILSKVQSRFEVNIPELPDEIDMSTYMST
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggctactgaaaacgaagacgaacttgtcgattacgacgaagaagaggaggttgccgtt
ggagataaagccaccgccggagaagaggcaaaggaaactaaaaaaggccactatgttggt
attcatgcctccggatttaaagattttttattaaaaccggaattattacgtgctattgtg
gatgctggatttgaacatccctcggaggtacaacatgagacgattcctcaagctgtttta
ggtggtgatattatttgtcaagcaaaatctggtatgggtaaaactgctgtctttacttta
gccacactccaacaagccaatgtggaagaagcaaaagtatcggttttagtgatttgtcat
actcgtgaacttgcctttcaaattgcacatgaatatgaacgatttagtaagtatttgcca
tccgtgaaaactgctgtcttttatggtggtgttccggtcaagcagaatctggaaatttta
aagaatgattgtccacacatcgtggtgggtacacccggacggatcttagcattggcacgt
gataaggctttgaatttaggcaacatcaaacattttgtcttggatgaatgtgatcgtgtc
ttggaatcattagatatgagacgtgacattcaagaaatctttcgtttaacaccccacgag
aagcaagtgatgctgttcagtgctaccttagcgaaggaggtccgaccggtctgtaagaag
ttttttgacgttgcatggcttgcattatattattccaaattagcggaagcggaaaagaat
cgtaaattaaatgatttattggatgcattagaattcaatcaggtggttatctttgtgtca
aaggttgcacgtgccaaagaattaaatcgtttattaacggaatgtaacttcccatcgatt
tgtatccatggtggtatgaaacaggaggaacgtattaaacaatacaaatcctttaaagac
tttaatgcacgtatccttgttgcgactgatttgtttggacgtggtattgatatcgaacgt
gtgaatgttgttatcaactatgatttcccggatgaaagtgatcaattcttacatcgtgtt
ggacgtgccggtcgatttggaacaaaaggtattgcaatttctttcatttcaagtgaaggt
gatcaagaaattttaagtaaggttcaaagtcgattcgaagtgaacattccagaacttcct
gatgaaattgatatgtctacctacatgagtacttaa
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