Fragilariopsis cylindrus: FRACYDRAFT_275637
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Entry
FRACYDRAFT_275637 CDS
T04784
Name
(GenBank) DEAD-domain-containing protein
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fcy03009
]
FRACYDRAFT_275637
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRACYDRAFT_275637
Ribosome biogenesis [BR:
fcy03009
]
Eukaryotic type
90S particles
Helicases
FRACYDRAFT_275637
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
GpA_ATPase
AAA_22
PAC2
DUF3245
AAA_30
UvrD-helicase
AAA
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
OEU15344
JGI:
275637
UniProt:
A0A1E7FB22
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MSSLFGKKRKKSLNSERHNTDLKRKQDEIEISSSPIENNNFNDLGLAEPLVETCRALGFK
RPTPVQRNIIPYLLQEESAHVLALASTGSGKTAAFVLPILHRLSADPYGIYAVIVSPTRE
LAKQIHQQVLALGSSYNVESTLVVGGMDMTKQSTTLEHRKPHFVVATPGRLAELLRGPSP
PKLQHVRFLVLDEADRLLTANSGFERDVAELLLHCNRNKRTQCQTLLFSATMTRSLESVE
KIAGAGQGRLPLKKFVIRDDQYTGLKQEYIFMPSRVRDAYLLTTIRTLLSNGGRARDSNG
RHAWRGKNRHNGNESEDNDDDEEEEGKSRSAIVFVATCERAALVSEIFSHVGVENVALHS
LLTQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVINSELPRNPVSYIHRIGRTA
RAGRRGRAISLVSETDVSLVHAAEEITGRPLGKCSEVTDEAAIKMLGPVTKAARLAKMKL
MDIGFDDLVKKFKERKVRDRKDPSAQQTARCLRS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgctttttggaaagaagaggaagaagtctctcaatagcgagcgtcacaatact
gatttgaagagaaaacaagatgaaatagaaatatcatcatcaccgatagaaaataataac
tttaatgatctgggtttagccgagccactcgtggagacgtgcagagcattggggttcaag
cgaccaacacccgtccaacgaaatataatcccataccttctacaagaagagtcggctcat
gtattggccctggcatctacgggttcaggtaaaacagctgcttttgttttgcctattcta
catcgtctatcagctgatccatacggcatttatgccgttattgtctctcctacacgggag
cttgcgaagcaaatccatcaacaagttttggcacttggtagttcatacaacgtcgaatcg
acgttggtcgttggtggtatggacatgacaaaacaatcaacgaccttagaacatcggaaa
ccacactttgtcgtcgctacgcctggacgattggctgagttacttcgtggacctagtcca
ccaaagcttcaacatgttcgttttctggtattagatgaggcagatcgtctgttgactgca
aattcaggatttgaaagggacgtggcagaattgctactacattgtaatcggaataaacgg
acgcaatgtcaaacattactctttagtgcgacgatgacacgaagtttggagagtgttgaa
aaaattgcgggagcgggacaaggacgattacctttgaagaaatttgtcattagagatgat
caatatactggattgaaacaagaatacatatttatgccatctagagttagagatgcgtac
ctgcttactacgattcgaactttattgtcgaatggaggacgagcgagggatagtaatggt
cgtcatgcttggagaggaaagaatcgtcataacgggaatgaatcggaagataatgatgac
gacgaagaggaggaaggaaaatcccgttcggcaattgtctttgtcgcaacctgtgaacgt
gcagcattggtatcggagatattttcccacgttggtgtagagaacgtggcattacactcg
ttactcacacagaatagacggctagcggcacttgccaagtttaaatctcaacaggttcga
gtcttggtggccactgatattgctagtagaggtcttgatgtaccctctgtggacctagtt
attaattcggaattgccaagaaatcctgtctcctacatccatcgaattggtagaactgct
cgagccggtcgtcgtggtcgtgctattagtttagtatccgaaacagatgtttcgttagtc
catgcagccgaagagataactggaagacctcttggaaaatgctccgaggttaccgacgaa
gctgcaataaagatgttagggccggtgaccaaagctgctcgtcttgctaaaatgaaatta
atggatattggttttgacgatttagttaagaaattcaaggaacgaaaagtacgtgatcgg
aaggatccgtctgcacaacaaacagcccgttgtttacgttcttga
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