Fragilariopsis cylindrus: FRACYDRAFT_277796
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Entry
FRACYDRAFT_277796 CDS
T04784
Name
(GenBank) DEAD-domain-containing protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_277796
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_277796
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_277796
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRACYDRAFT_277796
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
FRACYDRAFT_277796
mRNA cycle factors
Common to processing body (P body) and stress granule
FRACYDRAFT_277796
Spliceosome [BR:
fcy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
FRACYDRAFT_277796
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
FRACYDRAFT_277796
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
OEU07483
JGI:
277796
UniProt:
A0A1E7EPL9
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MFLLLLLLLLLLLKMSYVLFCSCTTDCTRISLQQPARSSYSGGGGGGGGGGRGGGGGGGG
GGGGEPRRNSRWSEVDAGGGGDDRRGSNYGDRGGGRGGGGGYNDRRGSSYGSRTNERGFH
GDIQPDPRMERQLFGQEDHQVTGINFDNYDKIPVEVSGENSPDPITEYTVDTIGEDLYRN
TQLCGYQRPTPVQKYSCPIGSAGRDLMACAQTGSGKTAGFLFPIIMAMIKNGGREAPDNG
RRQVYPEALIMAPTRELAQQIYEEGRRFCYCTGIATVCIYGGAEVREQLRQIERGCDLLV
ATPGRLVDLIERGRLGMDNIQFLVLDEADRMLDMGFEPQIRRIVEESGMPQGDGRQTMMF
SATFPAQIQRLASDFLRDYIFLTVGRVGAASKDVTQTVEYVEERDKLDAVMKYLLTIEDG
LILIFTETKRNCDYLEDVLCAKGFPACSIHGDKSQREREDSLRSFKKGITPVMAATDVAS
RGLDIPNVTQVINYDLPTNIDDYVHRIGRTGRAGNTGNALSFVNEKNSGVIRELRDMLDE
NEQVVPPWLNQMAANSGNRGGGGRGRNSGGSKNFGGRDFRKSGGGGGGGGGGGGQRQSGY
GGGGGFGGGGGYGGGSGSSNGGNFGGAW
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtttcttcttcttcttcttcttcttcttcttctcctcaaaatgtcgtacgttttgttc
tgctcatgcactacggactgcacacggatttcactgcaacaacctgcccgaagtagttac
agtggtggaggtggcggcggcggtggtggtggccgcggaggtggaggaggaggtgggggt
ggtggaggaggagaacctcgtcgtaattctcgttggagtgaagtagatgccggtggtgga
ggcgatgaccgtcgtggaagtaactatggtgatcgtggtggaggacgaggcggtggtggc
ggatataacgaccgtcgtggttcttcctacggttcacgtaccaatgaacgtggattccat
ggtgatattcaacccgatccacgtatggaacgtcaactgttcggacaagaagatcatcaa
gttaccggtattaacttcgataattatgataaaatccctgttgaagtttctggtgaaaat
tcacctgatcctattaccgagtacaccgttgatactatcggtgaagatctgtatcgtaat
acccaactttgtggataccaacgaccaacacctgtccaaaaatattcttgtcctatcggt
agtgccggtcgggatttaatggcctgtgcccaaactggttctggtaaaactgctggtttc
ttatttccgatcattatggctatgattaagaatggtggacgagaagctcctgataatggt
cgccgtcaggtctatcctgaagcattgatcatggccccaacacgtgaacttgcacaacaa
atttatgaagaaggtcgtcgtttctgttactgtaccggaattgctacagtctgtatttat
ggtggtgcagaagttagagaacaactccgtcaaatcgagcgtggttgtgatttactagtt
gcaactcctggtcgacttgtcgatttgattgaacgtggtcgtctcggtatggacaatatc
caattcttagtcttggacgaagctgatcgtatgcttgatatgggtttcgagcctcaaatt
cgtcgcattgtcgaagaatccggtatgcctcaaggtgatggccgtcaaacaatgatgttc
agtgcgaccttccccgctcagatccaacgtttggcaagtgatttcctccgtgattacatc
tttttaactgttggtcgtgtcggagcggcttccaaggatgttactcaaacggttgagtac
gtcgaagaacgtgacaagttggatgctgttatgaaataccttttgacgattgaggatgga
ttaattttaatcttcacagaaactaagcgtaactgtgattacctcgaggacgtattgtgt
gccaagggctttcctgcttgttccattcacggtgataagagccaacgtgaacgtgaagat
tcgttacgtagtttcaaaaagggtatcactcccgttatggcagctaccgatgttgctagt
cgtggtttggacatccccaatgtcactcaagttatcaattacgatttaccaaccaacatt
gatgattatgtgcatcgaattggacgtactggtcgtgctggaaacaccggtaacgcactt
tctttcgtaaatgaaaagaattccggtgttatccgtgaacttcgtgatatgctcgatgag
aatgagcaggtagttcctccatggctgaaccaaatggcagccaacagtggtaaccgcggt
ggtggtggtcgtggccgtaatagcggtggcagcaagaactttggtggacgtgatttccgt
aaaagtggcggcggtggaggaggaggaggtggtggaggaggacaacgccaaagtgggtac
ggtggtggtggaggcttcggtggtggcggtggatatggaggaggaagcggaagcagcaat
ggtggaaactttggtggtgcctggtaa
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