Fragilariopsis cylindrus: FRACYDRAFT_291505
Help
Entry
FRACYDRAFT_291505 CDS
T04784
Symbol
cSHMT
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy00260
Glycine, serine and threonine metabolism
fcy00460
Cyanoamino acid metabolism
fcy00630
Glyoxylate and dicarboxylate metabolism
fcy00670
One carbon pool by folate
fcy01100
Metabolic pathways
fcy01110
Biosynthesis of secondary metabolites
fcy01200
Carbon metabolism
fcy01230
Biosynthesis of amino acids
fcy01240
Biosynthesis of cofactors
fcy04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
FRACYDRAFT_291505 (cSHMT)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
FRACYDRAFT_291505 (cSHMT)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
FRACYDRAFT_291505 (cSHMT)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
FRACYDRAFT_291505 (cSHMT)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
FRACYDRAFT_291505 (cSHMT)
Enzymes [BR:
fcy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
FRACYDRAFT_291505 (cSHMT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHMT
Beta_elim_lyase
Beta-prop_TEP1_2nd
Microp_apicomplexa
Motif
Other DBs
NCBI-ProteinID:
OEU19208
JGI:
291505
UniProt:
A0A1E7FM07
LinkDB
All DBs
Position
Unknown
AA seq
534 aa
AA seq
DB search
MMKTFFQVNSVIFFLTITLPCTNALLSREITVSCHSHNRVTSWCTAESTRCVTTMKVSKE
KTTDVDDMISASEDYQLSDFDPDLAAMINAEDLRQRKGLELIASENFASKAVREVLGSCL
TNKYSEGTVGKRYYGGNEFIDQIETLCMDRALSLYDLDPEEWGVNVQPYSGSPANFEVYT
ALLNPHDRIMGLDLPSGGHLTHGFQTAKKKVSATSVYFESMPYIVSSDTGLIDYDDMEYR
AKMFLPKLLIAGGSAYPREWDYKRMREIADSVGAKLMVDMAHISGLVAGRVVDSPFKYAD
IVTTTTHKSLRGPRSGMIFGRLDFMDSINSAVFPMLQGGPHNHQIGALAVALKEASEPKF
AEYIRAVVSNAKALGAGLEKRGHKLATGGTDNHLLLWDVRPLGLTGSKADMVLEKASMTA
NKNSLPGDVSAINPGGVRLGTPALTTRGLDEQDFDQVAEFLHRGCEIAIKAQHIAEHNLA
KQLDAGEIVRKTKKVLLKDFKQVVECDDDVKVEIDKLRQDVEDFATPFFMPGQL
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaactttcttccaagtaaattccgtgattttctttctaacgataacgttgccg
tgtacaaatgctttgttgtcgcgggaaatcacagtctcctgtcactcacataatcgggtg
actagttggtgtactgcagaatctactcgttgtgttaccacgatgaaggtttcgaaagag
aagactaccgatgtcgatgacatgatatctgcttcagaggactaccaactgagtgacttt
gatcccgaccttgccgctatgataaacgccgaggatcttcggcagcgaaaaggcctagaa
ttgattgcttccgaaaactttgcaagtaaagctgttagagaggtccttggtagttgtttg
acaaataaatacagcgagggaacagtaggaaaaagatattatggcggcaacgaattcatc
gatcaaattgaaacattatgtatggaccgtgcactttcgctttatgatcttgatcctgaa
gaatggggagttaacgtgcaaccgtactcgggatcgcctgccaatttcgaagtatataca
gcattattgaatccgcatgatcgaattatgggattggatctgccttcaggtggtcattta
acccatggatttcagaccgcaaaaaagaaagtgtcagcaaccagcgtatatttcgagagt
atgccttatattgtgtcgtccgatactggcctcatcgattacgatgatatggaatatcga
gccaagatgttcctacctaaacttttgatcgccggaggttcggcctaccccagagaatgg
gactataaacgaatgagagagattgcagattctgtgggagcgaagctgatggttgacatg
gcccatatttcgggtctagtagcaggacgagttgtagatagtccctttaagtatgctgat
atcgtgacgactacaacacacaagtcattacgtggacctagaagtggaatgatttttggt
cgactggattttatggatagtattaattctgctgtatttcctatgcttcaaggtgggccc
cataatcatcaaataggtgccctggcagttgcactgaaggaagcaagcgaaccgaaattc
gctgagtatatacgggctgtagtatcaaatgcgaaagcattgggtgctggacttgaaaag
cgaggtcataaattagccactggtggaactgataatcatttactactttgggacgtacgt
ccattaggattaactggatcaaaggctgacatggtcttagaaaaagccagcatgaccgct
aacaagaatagcctacccggagacgtatctgccatcaacccaggtggtgttagacttgga
actcctgcattgacaacacgtggactagatgaacaagattttgatcaagtagcagaattt
cttcatcgaggttgtgaaatagcaatcaaagcccagcatatcgcagaacacaacctagct
aaacaacttgacgctggtgagattgtcagaaaaaccaaaaaggttttactaaaagatttc
aaacaagtcgttgaatgcgacgacgacgttaaagtagaaattgataagttgagacaggat
gtcgaagactttgccacccctttctttatgccgggacaactttaa
DBGET
integrated database retrieval system