Candidatus Fermentithermobacillus carboniphilus: IMF26_05375
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Entry
IMF26_05375 CDS
T09838
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fcz
Candidatus Fermentithermobacillus carboniphilus
Pathway
fcz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fcz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IMF26_05375 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcz03021
]
IMF26_05375 (rpoD)
Transcription machinery [BR:
fcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IMF26_05375 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Exonuc_VII_L
Sigma70_r4_2
KORA
HTH_20
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
QUL99469
UniProt:
A0AAT9LEK5
LinkDB
All DBs
Position
complement(1123219..1124451)
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AA seq
410 aa
AA seq
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MKDLEQGKEAIKELIALGKKKGFLTYKEIGDFLHDLELSPQQVDDVYKALNSMGIDVVSE
RQAASEGRALKHFDDDEAYFSDEAEQDLAEKGIGDVHDTAGATPLSRKVARDEDVVEIEN
PEEVTDIDLSVPEGVALDDPVRMYLKEIGRVPLLTAEEEVELAKRMEMGDKEAKQRLIEA
NLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKLSTYATWWIRQAITRA
IADQARTIRIPVHMVETINKLIRIERQLLQQLGRSPTAEEIAEEMGITPDKVREIQKIAQ
EPVSLETPIGEEEDSHLGDFIEDEDAPAPAEAASFLLLREQIEEVLDTLNEREQKVLRLR
FGLDDGKARTLEEVGREFGVTRERIRQIEAKALRKLRHPQRSKKLRDYLV
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggatctcgaacaaggtaaggaagcaataaaagagctaattgcccttggtaagaag
aaggggttcttgacgtacaaggaaatcggcgacttcttgcacgatcttgaactgtctcca
cagcaggtcgatgacgtatacaaagccttgaacagcatgggcatagatgtggtgagcgaa
aggcaggccgcttccgagggccgtgctttgaaacattttgacgatgacgaggcttatttc
tcggatgaggctgagcaagatctggccgaaaaaggtatcggcgatgtccacgatacagcc
ggggctactcctctttcgcggaaagtggcccgcgacgaggacgtcgtcgaaatagagaat
ccggaggaagtcaccgatatcgacctttccgtacctgaaggcgtcgcgctggatgatccc
gtcaggatgtatctcaaggagatagggcgggtaccgctccttaccgccgaagaagaggtt
gagctggccaaacgcatggaaatgggcgataaggaggcaaaacagaggctgattgaggca
aacctcaggctggtggtatccatagccaaaaggtacgttggaagaggcatgttgttcctg
gacctcatccaggaaggcaacatgggactcataaaagctgtcgagaaatttgactaccgg
aaaggatacaagctgagtacttacgccacgtggtggataaggcaggccatcaccagggca
attgccgaccaggcccggaccatcaggatcccggtgcacatggtcgagacgataaacaag
cttatacggatcgagcgacagctgctccagcagcttgggaggtctccgacggctgaagag
atagccgaagagatggggataacccccgacaaagtgcgggaaatccagaaaatcgcccag
gagcccgtctctctggagacgccgataggagaagaagaagatagccatctcggcgacttt
atcgaggacgaggacgcgcctgctcctgccgaagctgcgtcgttccttctcttgagggaa
cagatcgaagaagtcctggatactttgaatgaaagggagcagaaagtattgcggcttcgg
ttcggcctggatgacgggaaagccaggactctcgaggaagtcgggcgagagttcggcgtg
accagagagaggatccgtcagatagaggcaaaagctctccggaaactcaggcatccccag
cgcagcaaaaaactcagagattacctggtgtaa
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