Candidatus Fermentithermobacillus carboniphilus: IMF26_06985
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Entry
IMF26_06985 CDS
T09838
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fcz
Candidatus Fermentithermobacillus carboniphilus
Brite
KEGG Orthology (KO) [BR:
fcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fcz03016
]
IMF26_06985
Enzymes [BR:
fcz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IMF26_06985
Transfer RNA biogenesis [BR:
fcz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IMF26_06985
Prokaryotic type
tRNA splicing ligases
IMF26_06985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
GAPS4b_N
CysS_C
Motif
Other DBs
NCBI-ProteinID:
QUL97834
UniProt:
A0AAT9L9W8
LinkDB
All DBs
Position
complement(1432607..1434052)
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AA seq
481 aa
AA seq
DB search
MSPRLQQVQGEKCRWVMPQADGMRVPGIIFATEEIIEDLGETKALDQVKNVAYLPGILVA
SMAMPDIHEGYGFPIGGVAATSLENGVIVPGGIGYDINCGVRLLLSDLVRKDVEKHIESL
VEKMFEKIPTGVGREGPIRLSRKEMDEVLEKGAAWALERGYGWKEDLEYSEEHGGMKGAD
PGAVSDKAYKRGKAELGTLGSGNHFIEISYVETIYEPGVADAFGLFKDQVVFWVHSGSRG
LGHQVCTDYLGVMREARAKYGISLPDRQLDSAPVSSPEGKRYFAAMAAAANYAWANRQVL
SHYVRQAVGESLGKDPESLGMRLLYDVAHNIGKIEEHLVEGKKMKVMVHRKGATRAFGPG
HRDVPERFRNVGQPVLIPGDMGRASYVLAGTEKAMEVSFGSACHGAGRALSRTQAKKTVS
AEDLKRELSSRGVFVRSATAKGLVEESPWAYKDVDEVVEATACAGLARKVARLRPMGVIK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagacttcaacaagttcagggtgaaaagtgtagatgggtgatgccgcaagcg
gatgggatgagagtccccggcataatattcgcgacggaggaaatcatcgaggacctgggc
gaaaccaaggctctcgatcaggtcaagaatgtggcgtacctgccgggtatactggtggca
tccatggcgatgcccgatatccacgaaggttacggattccccatcggaggtgtcgcggcg
acctccctcgaaaatggagtcattgtccccggaggcatcgggtatgacataaactgcggg
gtcaggctgcttctatccgatcttgtcaggaaggatgttgaaaaacatatagagagccta
gttgagaaaatgtttgaaaagatcccgacgggtgtcggcagggagggtcccataagactt
tcgagaaaagaaatggacgaagtgcttgaaaaaggtgcggcatgggctctcgaacgcggc
tacggatggaaagaggacctggaatactcagaagaacacggtggcatgaaaggagccgat
ccgggcgccgtttcagacaaagcatacaagcggggcaaggctgagctgggaactttaggc
tcggggaaccacttcatcgagataagttacgtcgaaaccatatatgaacccggggttgca
gatgcatttgggcttttcaaggatcaggtggtcttctgggttcactcgggctcgaggggg
ttgggtcaccaggtttgtactgactatctaggtgtgatgagagaagcgcgggcaaagtac
ggcatatcgctcccagacaggcaactcgattctgcgccggtgagttcacctgagggtaaa
aggtattttgccgccatggccgcggcggccaactacgcgtgggcaaacaggcaggtcctg
tcacactacgtgaggcaggcggttggcgagtctcttggcaaggaccccgagagtttgggg
atgcgccttttgtacgatgttgcccataacataggtaaaatcgaagagcacctggtcgaa
ggcaaaaagatgaaagttatggtgcacaggaaaggtgccacacgcgcctttgggcccggc
catagggacgtgcctgaaagattccggaacgtcgggcagccggtattaatcccaggagac
atgggtagagcctcctacgtgcttgcagggacagaaaaggcaatggaagtgtcgttcggc
tcagcctgtcacggggcgggaagggctctttccaggactcaggcgaaaaagactgtgtcc
gcagaagatttgaaaagggagctttcctcaagaggggtgttcgttagatccgccacggcc
aaggggcttgtagaagaatctccctgggcgtataaggacgtggatgaggtggtagaggcg
accgcgtgtgccgggcttgcgagaaaagtggcgagactccggccgatgggtgtcataaaa
ggatga
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