Candidatus Fermentithermobacillus carboniphilus: IMF26_07435
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Entry
IMF26_07435 CDS
T09838
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fcz
Candidatus Fermentithermobacillus carboniphilus
Pathway
fcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMF26_07435 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcz03021
]
IMF26_07435 (rho)
03019 Messenger RNA biogenesis [BR:
fcz03019
]
IMF26_07435 (rho)
Transcription machinery [BR:
fcz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IMF26_07435 (rho)
Messenger RNA biogenesis [BR:
fcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IMF26_07435 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
ATPase_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QUL99635
UniProt:
A0AAT9LER1
LinkDB
All DBs
Position
1525268..1527535
Genome browser
AA seq
755 aa
AA seq
DB search
MPQDVYPPETQSEPQEVRADGTPVDEPKPRTRRRGSRAKTAQEQPVSDSRAEPETEAAEK
PRRRTRRTRKTDAAGELPEGSGPIQDTREAPEGQEVADGHPPQEEVKTAGTDRENAAGLP
QEPPSLQPVEAAQPQETPAPKRRARRTRKAAEEPLSAAEKAEAETAQKVSVIGQDAAKLP
QAAELPELPLQVPLEEPSAERREELAETRTTQETLTLHETGAKTATVPAEPRVPEIPASE
RIASEETRESEPVAPAPAVEDKVAPAETVPAIYEGERSEAVETAEKKAEIEPPSRLPETE
PEAYREAIARPDQVAEIPGVVRQPRPTVVRPKPGPGPSMRELENMTLVELQKMARELGIQ
GYSTLRKKELVFEILKARTQAGGLIFAEGLLEILDEGYGFLRPAFYFPSKDDIYISPSQI
RKFDLRTGDLVSGQVRPPKDTERYYGLLRIEAINGEDPETARERPNFEGLTPIFPNERFR
LETTRTEISGRLLDLVAPVGKGQRGLIVSPPKAGKTVLLKKIANAITQNHPEVYLMVLLI
DERPEEVTDMQRSVKGEVIASTFDEPPENHARVSEMALERAKRLVENGRDVVILLDSITR
MTRAYNLIEPTSGRTLTGGMDPAAFHKPKRFFGAARNIEEGGSLTILATCLIDTGSRMDD
VIYEEFKGTGNMEVHLDRKLSERRIFPAIDIKRSGTRKEELLQSKEELEAMWLFRKMTND
LEPDKVLEGLIELLNQTRNNREALPLIKRRLALMR
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgccacaggacgtttacccacccgagactcaatctgagcctcaagaagtgagagcggac
ggaaccccggttgacgaaccgaagccgaggaccagaaggagaggctcaagggccaaaacg
gctcaagaacagccagtttccgattcccgggcagaacctgaaaccgaggcagccgaaaag
cccaggcgccggaccaggcggacgaggaagacagacgctgctggagagttgccggagggt
tctggaccaatccaggacaccagggaggccccggagggtcaggaggtcgccgatggtcat
cctccccaggaagaagtaaagacagccgggacagaccgagagaatgcagccggtttgccc
caggagcctccttccctgcagcctgtggaagcggcccaacctcaagagacccctgcgcct
aagagaagagcgagacgaaccagaaaagccgccgaagagcctttatccgcggccgaaaag
gctgaggcagaaaccgcacaaaaggtttcagtgataggacaggatgcggcaaaactcccc
caggcggcagaacttcctgaactccctcttcaggtgcctctcgaagaaccttcagcggaa
agacgagaagagctcgcagaaaccaggactacgcaggaaactttgaccctgcacgagacc
ggggccaaaacagccaccgtgccagctgaaccgcgtgtcccggagattcccgcctctgaa
agaatagcctcggaagaaactcgggaatccgagcctgtggcgccggcccccgcagtcgag
gacaaagtggctcccgccgagaccgtgcccgcgatttatgaaggtgaaaggagtgaggcg
gtggaaactgcagaaaaaaaggcggagatagaacctccttcgagactccccgagactgag
cctgaggcctatcgcgaggctattgccagacctgatcaggttgccgagattcccggcgtc
gtgcgccagcctaggcctacggtggtgcgcccgaaaccagggccgggtccttcgatgcgg
gaacttgagaacatgacgctggtagagctccagaagatggcccgcgaacttggcatccag
ggatactctacgttgaggaagaaagagctcgtgtttgagatactcaaggcccgaacccag
gcgggagggttgattttcgctgaaggtctcctcgaaatcctggatgaaggttacggattc
ctgcggcccgcgttctatttcccgagcaaagacgatatatatatatctccgtcccagatc
cgcaaattcgacctcaggactggcgacctggtatccgggcaggtgaggccgcccaaagat
accgagcggtattacggactcttgaggattgaggcgataaacggggaggatccggagacc
gcccgtgaacgccccaactttgagggtctcacgccgatattccccaacgagaggtttcgg
cttgagaccacgaggaccgagatctcaggccggctcctcgacctcgtggccccggtgggc
aaaggccagagaggactcatcgtctctccgcctaaagcgggcaagacagtccttctgaag
aaaatcgccaatgccatcacccagaaccatcccgaggtctacctcatggtcctcctcatc
gacgagcgtcccgaggaagtgaccgacatgcagagatccgtcaagggcgaagtgatagcg
tccaccttcgatgagccgccggaaaaccacgctcgagtgtcggaaatggccctcgagagg
gcaaagcgtcttgtagagaacgggcgcgacgtggtcatactgctcgacagcataaccagg
atgaccagggcctacaacctcatcgagcctacatcgggaaggacgctgacgggaggtatg
gacccagcggcattccacaagcctaagcggttcttcggcgctgcccggaacatagaagag
ggcggaagcctgactatccttgccacctgcctgatcgataccggaagcaggatggacgac
gtgatctacgaagagttcaagggtacaggcaacatggaagtgcaccttgaccggaaactc
tccgagcggaggattttcccggccatagacataaagcggtcaggtacgcgaaaagaagaa
ctcctccagtccaaagaggaactggaagcgatgtggctcttccggaagatgaccaacgac
cttgagcccgataaagtactcgaaggtctaattgaacttctcaaccagaccaggaacaac
cgcgaagccctgcccctcatcaagagaaggctggcattgatgaggtaa
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