Flavobacterium dauae: NU10_03370
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Entry
NU10_03370 CDS
T09251
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fda
Flavobacterium dauae
Pathway
fda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NU10_03370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fda03019
]
NU10_03370
03009 Ribosome biogenesis [BR:
fda03009
]
NU10_03370
Enzymes [BR:
fda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NU10_03370
Messenger RNA biogenesis [BR:
fda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NU10_03370
Ribosome biogenesis [BR:
fda03009
]
Prokaryotic type
rRNA helicases
NU10_03370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
WLD24452
LinkDB
All DBs
Position
complement(725160..726986)
Genome browser
AA seq
608 aa
AA seq
DB search
MNKFQELGLNELLLKAIQDLGFENPSEVQEKAIPLLLQQDTDIVALAQTGTGKTAAFGFP
LIQKIDPENRSTQALILSPTRELCLQITNEIKQYSKYVKGLHTVAVYGGASITEQAKEVK
RGAQIIVATPGRMQDMINRNYVNIKNIQICVLDEADEMLNMGFYDDITSILSDTPDEKNT
WLFSATMPQEVARIAKEFMKRPQEITVGHKNQGSVNVSHEYYLVGARDRYPVLKRLADMN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKAFRGRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYNHRSGRTGRAGKTGTSIVIVTKSEFKKIQMIERI
IKTKFVQKPIPTGMEICEVQLIHLANKARSVEVDSEIDKYLPKIEELLGDLSKEELIKKM
FSLEFNRFIEYYKKQNTIDSPKSREKGEATVNSDGSVRYFLNLGARDNFDWMSLKDFLRD
TLDLGRDDLFKVDVKEGFSFFNTDASHSERVMEILNNMHHEGRQVNVEISTSGGGSSSRR
DHNGRGGRSGGFRGERSGGFRSERSSSDRRSSGGERRTEGKFGRRREDDRPARNERRSVR
GDRPRRSN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattccaagaattaggattaaacgaattgcttttaaaagcaattcaggactta
ggttttgaaaacccttcagaggttcaggaaaaagctattcccttattgttgcaacaagat
acagatatcgttgcactggcgcaaacgggtactgggaaaacagctgctttcgggtttcct
ctgattcaaaaaattgatccggagaacagaagcacacaggcattaatcctatcgcctacc
agagaattgtgtttacaaattaccaacgaaatcaagcaatattcaaaatatgtaaagggc
ttacatacagttgcggtttatggcggtgccagcattacagagcaggcaaaagaagtgaaa
cgtggtgcacaaattattgtggcaacacccggtcgtatgcaggatatgattaacagaaac
tatgttaacattaaaaacatacaaatctgtgtattagacgaagctgatgaaatgttgaac
atgggattctatgacgatattacatcaatattatctgatacaccagacgaaaaaaacaca
tggcttttctctgcaactatgccacaggaagttgcacgaattgctaaagaatttatgaaa
cgtccgcaagaaattacggtgggacataaaaatcaaggatcggtaaacgtatcgcacgaa
tattatttggttggtgcacgtgatcgttacccggttttaaagcgtttagcagatatgaac
cccgatattttctcggttgttttctgtagaacaaaacgcgatacacaagcagttgccgaa
aagttaattgaagacggatacaacgcagcagctttacacggtgatttatcgcaagcacaa
cgcgatggtgtaatgaaggcattccgtggtcgccaaattcaaatgctggtagctaccgat
gttgccgcccgtggtattgatgttgacgatattacacatgtgattaactatcagttaccc
gatgaaattgaaacctacaaccaccgttcaggtcgtaccgggcgtgcaggtaaaacaggt
acatcaatcgttattgtaacaaaatctgagttcaaaaaaattcagatgattgaacgtatc
attaaaacaaaatttgttcaaaaaccaattccaaccggaatggaaatttgcgaagtgcag
ttaattcacttagcaaacaaagcaagatctgttgaggttgattcagaaattgataaatac
ttgccaaaaatcgaagaattattaggcgatttatcaaaagaagaattaatcaaaaaaatg
ttttcgttagaattcaatcgttttattgaatattacaaaaagcaaaatacaatcgattct
ccaaaatcccgcgaaaaaggcgaagctactgtaaattctgatggttcggttcgttatttc
ttaaatttaggtgctcgtgacaatttcgattggatgagtctgaaagatttcttacgtgat
acgttagatttaggcagagatgatttatttaaagttgatgtaaaagaaggattttcgttc
tttaataccgatgcttcacacagcgaacgtgttatggaaatattgaacaatatgcaccac
gaagggcgtcaggtaaatgttgaaatttctaccagcggtggtggttcatcttcaagaaga
gatcacaatggcagaggaggcagaagcggcggcttccgtggtgaaagaagtggtggtttc
cgcagcgaacgctcttcatcagatagaagatcatcaggtggcgaacgaagaacagaaggt
aaatttggacgtcgcagagaagacgatcgcccagcaagaaatgaacgcagatcggttcgt
ggagatcgtccacgaagatccaactaa
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