Flavobacterium dauae: NU10_06420
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Entry
NU10_06420 CDS
T09251
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fda
Flavobacterium dauae
Pathway
fda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NU10_06420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fda03019
]
NU10_06420
Enzymes [BR:
fda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NU10_06420
Messenger RNA biogenesis [BR:
fda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NU10_06420
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
ERCC3_RAD25_C
Ntox50
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLD25005
LinkDB
All DBs
Position
complement(1324583..1325851)
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AA seq
422 aa
AA seq
DB search
MDFTDFLLNNNVAEAIKDLGYTTATPIQEKAIPSLIDGKDLVGCAQTGTGKTAAFAIPII
NHIHRIVGSGKKRKQIRTIILSPTRELAIQIAENFEAISKYTQIKTYVIYGGVNMQPQIN
ALKEGIDVLVATPGRFLDLYKQNFIKTDALHQLVIDEADLMLDMGFINDVRKIIKLTPQN
RQTLMFSATMPMGVRELADEFLSNAVYVSVDPTSSTGENITQKTYLVEKEDKKKLLKHVL
ETQNLKNVLLFTRTKQGADQVVDFLQKEGYKANAIHGDKSQAVRLQILEDFKNKQIDILV
ATDVASRGIDIQQLPFVINYDIPNIPEIYVHRIGRTGRAGEEGLALSFVGRDEKNYWQDI
EKLIRLQVKVVKDNPFPWREPNPNAKKDFRNKGKSTSANNSNKKNSSSRKSDASKKNKKR
WY
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggattttactgattttttgctgaacaataatgttgccgaagctattaaagatttaggt
tacaccactgccacgcctattcaggaaaaagcaattccgtctttgattgatggaaaagat
ttggtaggttgtgcacaaaccggaaccggaaaaacagcggcatttgccattcctatcata
aatcatatccacagaattgtaggttcgggcaaaaaacgcaaacagattagaactattatc
ctatctcctacccgcgaattagctatacagattgccgaaaattttgaagccataagtaaa
tatactcagattaaaacctacgtaatttatggaggtgtgaacatgcaacctcaaattaac
gcattgaaagaaggtatcgatgtacttgttgcaacacccggcagatttttagatttatac
aaacagaactttattaaaaccgatgctttacatcaattagtgattgatgaagccgattta
atgctggatatgggttttataaatgatgttcgtaaaattataaaactgacaccgcaaaac
agacaaaccctgatgttttcggcaactatgccaatgggcgtgcgtgaattagccgatgaa
tttttaagcaatgctgtgtatgtttcggttgatccgacttctagtaccggtgaaaatatt
acacaaaaaacctatcttgttgaaaaagaagacaagaagaaacttttaaagcacgttctt
gaaacgcaaaacctgaaaaatgttctgctttttacaagaacaaagcaaggtgccgatcag
gtggttgattttttacagaaggaaggttataaagccaatgccattcacggagataagtcg
caagctgtccgattacagattttagaagattttaaaaacaaacagattgatattttagtt
gctaccgatgtggcatcgcgtggaattgatattcagcaactgccatttgttattaattac
gatattccgaatattccggagatttacgttcacagaattggtagaactggtcgtgccggc
gaagaaggtttggcactttcatttgttggtcgcgatgaaaaaaactattggcaggatatt
gaaaaactaattcgtttacaggtaaaagtggttaaagacaatccttttccgtggcgcgaa
ccaaacccgaatgccaaaaaagactttagaaataaaggaaaatcaacatctgcaaacaac
tctaataaaaaaaattcatcatcacgaaaatccgatgcttctaaaaaaaataaaaagaga
tggtattaa
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