Flavobacterium dauae: NU10_09110
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Entry
NU10_09110 CDS
T09251
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fda
Flavobacterium dauae
Pathway
fda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NU10_09110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fda03019
]
NU10_09110
03400 DNA repair and recombination proteins [BR:
fda03400
]
NU10_09110
Enzymes [BR:
fda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NU10_09110
Messenger RNA biogenesis [BR:
fda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NU10_09110
DNA repair and recombination proteins [BR:
fda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NU10_09110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
Motif
Other DBs
NCBI-ProteinID:
WLD22877
LinkDB
All DBs
Position
1872375..1874273
Genome browser
AA seq
632 aa
AA seq
DB search
MFEALHILKKHWGYDSFRFPQEEIIESVFQGNDTLALLPTGGGKSVCFQIPALMTDGICL
VISPLIALIEDQINQLKDRNIKALSISGNLSTEDISNLLDNSQYGNYKFLYIAPERLKNE
WILSRIIQLPINLVAIDEAHCISQWGHDFRPAYLEIGKLKEWLPNVPFIALTASANNRVQ
EDIINILQLKNPKIFKKTFLRNELYYGVYQQENSEELLFQILKKNPSPAIIYVKSRKATI
EVAQNLKSYGISADFFHGGLDFKSKKQKLNDWLNETVLVMVATNAFGMGIDKPNVRNVIH
LHIPDNLESYYQEAGRAGRDGEKAFATLLLSSSSIHQAKGFHELNNLEIDFVKMVYKRFV
NHFQIAYGEGFNETIRFNFKDFCQKYNLPVSKTFHAFEFLDRQSVLSFEQAFKYKNYIHF
LINSNNAIAYFSNHSLEEILFLSILHHYRGIQEGETAIDIDVLSKHTKMPNQKIIETIES
WVLKGFCTFTQAPNDTNVMLTEVREDDITINRVAKNLTQFNAIKDQQFKAMLQYVTNTNI
CKNKILLNYFDEDYNDECGKCSACIQNKNSKNSSNLVDEIKAELKNYPKDHIFELADLKS
IYIHKSNYLAQALKELIEENEYLYKNATYIKL
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaagccttacacattttaaaaaaacattggggttatgattcttttagatttccg
caggaagaaataatagaatctgtttttcagggaaacgatacccttgctttgctgccaact
ggcggtggaaaaagtgtttgctttcagatacctgctttaatgaccgatggaatttgtctg
gttatttcgcctttaattgcattgattgaagatcagatcaaccagttaaaagaccgaaac
attaaggctttatccatatcaggaaatttatcaaccgaagatatttcgaatctgttggac
aattcccaatacggaaactacaaatttctatacattgctcccgaacgtttaaaaaacgaa
tggattttaagccgaatcattcaattaccaataaatttagttgctattgatgaagcacat
tgcatatcgcaatggggacacgattttcgtccggcttatttagaaatcggcaagttaaaa
gagtggttgcccaatgttccgtttatcgcacttacagcatcggcaaacaatcgtgttcaa
gaagatattataaatattcttcaacttaaaaatccaaaaatttttaaaaagacttttttg
cgaaacgaattgtattacggcgtttatcagcaggaaaattcagaagaattgttgtttcaa
atccttaaaaaaaatccttcaccggcaattatttatgtaaaaagcagaaaagctactatt
gaagtggcgcagaatttaaaatcgtacggaatttctgccgatttttttcacggcggcttg
gattttaaatcgaaaaaacaaaaactgaacgattggctaaacgaaactgttttggttatg
gtagccaccaacgcgtttggtatgggaattgacaagccgaatgtacgcaacgttattcac
ttgcatattcccgacaatttggaaagttattatcaggaagccgggcgtgcaggtcgcgat
ggtgaaaaggcgtttgcaacattattgttgagttcaagcagcattcatcaggcaaaaggt
tttcacgaactgaacaatctggaaatcgattttgtaaaaatggtgtacaaacgctttgta
aatcattttcaaattgcttatggcgaaggttttaacgaaacgattcgttttaactttaaa
gatttttgtcagaaatacaatttaccggtaagcaaaacttttcatgcgtttgaattttta
gatcgccagtcggttttaagttttgaacaagcatttaagtacaaaaactacattcatttc
ttaataaattcaaacaatgccattgcttatttcagcaatcattcgttagaagaaattttg
tttttaagcattttgcatcattaccgcggcattcaagaaggcgaaacagctattgatatc
gatgttttatcgaaacatacaaaaatgcccaatcaaaaaattatcgaaaccatagaatct
tgggttttaaaaggattttgcacgtttacacaggcgccaaacgacaccaatgttatgttg
accgaagtacgtgaagacgatattaccattaaccgcgtggcaaaaaaccttacacagttt
aatgccataaaagatcagcaatttaaggcgatgcttcaatacgttaccaacacaaacatt
tgtaaaaataaaatccttttaaattatttcgatgaagattataacgacgaatgtggtaaa
tgttccgcttgtattcaaaataaaaattcaaaaaacagtagcaatttagtcgatgaaatt
aaagcggaacttaaaaattatccgaaagatcatatttttgaattggcagatttaaagtcg
atctacattcacaaatcaaattatttagcacaagcattaaaagaattaatcgaagaaaac
gaatatctttacaaaaatgccacatacataaaattataa
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