Flavobacterium dauae: NU10_12460
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Entry
NU10_12460 CDS
T09251
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fda
Flavobacterium dauae
Pathway
fda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NU10_12460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fda03400
]
NU10_12460 (mfd)
Enzymes [BR:
fda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NU10_12460 (mfd)
DNA repair and recombination proteins [BR:
fda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NU10_12460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WLD23508
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All DBs
Position
2561106..2564456
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AA seq
1116 aa
AA seq
DB search
MSIKKIVEQATKTQQLQQQLNKLGNKIHAKGFIGSALSFQIQALFKESDQHFLLIFNDKE
EAAYYLNDLENLISKDYVLFYPGSYRRPYQIEETDNANVLLRAEVLNRLNARKKPVVIVS
YADALFEKVVTRKQLDKNTLKIAVNDKMTIDFVNEVLFEYNFKRVDFVSEPGEFSVRGGI
IDVFSFSNENPYRIEFFGNEIDSIRAFDVETQLSIETNKKITIIPNVENKFLQENRESFL
NYISPNTVLFIQNTVLVKEQLTKMFQKATEAFDKLNKDVQHLAPEQMFLPSAEFLQKADD
FTVVELAQQNFFTPNFSVDFHFNPQPSFNKQFDLLIENLNQNTSNGYTNYLYCSSESQSK
RFEEIFSSLKDQNKSIQQYKTVVMPLFQGFIDKENQIACYTDHQIFERYHKFSIKNGYTK
KQTITLKELTTLSVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLVYADNDIVYVSIHS
LHKISKYNGKEGTPPKIYKIGSGAWKALKQKTKARVKHIAFNLIKLYAKRRLEKGFACAP
DSYLQAELESSFIYEDTPDQLKSTIEVKADMENDRPMDRLVCGDVGFGKTEVAIRAAFKM
VDNGKQVAVLVPTTILAFQHYKTFTERLKDMPVNVAYLNRFKTAKQKAETLKELAEGKVD
ILIGTHQLVNKNVVFKDLGLLVIDEEQKFGVAVKDKLKTIGENIDTLTLTATPIPRTLQF
SLMAARDLSVITTPPPNRYPIETNVVGFNEEVIRDAIAYEIERGGQVYFINNRIENIKEV
AGMIQRLVPHAKVGIGHGQMEGKKLEDLLLSFMEGEFDVLVATTIIESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEEARKRISALEQFSDLGSGFNI
AMKDLEIRGAGDILGGEQSGFINEIGFETYQKIMNEAIDELKENEFKDLYEEEQNIDTKE
YVKDIVIESDFEILFPDEYINNVSERLTLYNELATLKTEDELIAFQNKLIDRFGALPRQV
VNLLDSVRIKWIASKAGIEKLVLKQGKMIGYFVSDQQSMYYQSAQFRKVLQFIQLYPKLA
TLKEKQTKNGLRLLLTFDQIRSINKALENLQKLQQL
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaaaaaaatagttgaacaagcaaccaaaacgcagcaactgcaacagcagctt
aacaaattaggcaataaaattcacgcaaaaggatttattggttcggcattgtcgtttcaa
attcaggcattgtttaaagagtctgatcaacattttttgttgatttttaacgataaagaa
gaagcagcttattatttgaatgatttggaaaatttgatttcgaaagattatgtgttgttt
tatcccggatcgtaccgcagaccatatcagatagaagaaaccgataatgccaatgtgttg
ttgcgtgccgaagttctaaaccgattaaacgcccgaaaaaaaccggttgtaattgtttcg
tacgccgatgctttgttcgaaaaagtggttacgcgtaaacaattggacaaaaacaccttg
aaaattgccgttaatgataaaatgacgatcgattttgtaaacgaagttttgtttgaatac
aattttaaacgtgttgattttgtttcggaacccggcgaattttctgttcgtggtggaatt
atcgatgtattttctttttcgaacgaaaacccataccgaattgaatttttcggaaatgaa
atcgacagcattcgtgcgtttgatgtggaaacgcaactttcgatcgaaaccaataaaaaa
atcacgattatcccgaatgtagagaacaaatttttgcaggaaaaccgtgaaagtttccta
aattatattagcccaaataccgttttgtttattcaaaacactgttttagtaaaggaacaa
cttaccaaaatgtttcagaaagcaaccgaagctttcgataaactaaataaagatgttcag
catttggcaccggaacaaatgtttttgccttcggcagaatttcttcaaaaagccgatgat
ttcacggtggttgaactggcgcagcaaaacttttttacacccaatttttcagtcgatttt
cattttaatccgcaaccttcgttcaataaacagttcgatttgctaatagaaaacttaaat
caaaatacatcaaacggatacaccaattatctgtattgttcaagtgaatcgcaaagtaaa
cgtttcgaagaaattttcagcagcttaaaagatcaaaacaaaagtattcagcagtataaa
accgttgtaatgcctttgtttcagggttttatcgacaaagaaaaccagattgcgtgttat
accgatcatcagatttttgaacgataccataaattcagcataaaaaacggctacaccaaa
aagcaaaccatcactttaaaagaacttactacgctttcggttggcgattatgtaacgcat
attgaccacggaattggaaagtttggcggtttgcagaaaattgatgtagaaggcaaaaag
caggaagctataaaactggtgtatgccgataacgatattgtgtatgtatcaattcactcg
ctacacaaaatatcaaagtataacggtaaagaaggaacgccgccaaagatttacaaaatt
ggatctggtgcctggaaagccttaaaacaaaaaacaaaagcgcgtgtaaaacacattgcg
tttaatcttataaaactgtacgcaaaacgccgattagaaaaaggatttgcgtgtgcgccc
gacagttatttacaggcagaattagaaagttcttttatttacgaagatacgcccgatcag
ttaaaatctaccattgaagtgaaggctgatatggaaaatgatcgtccaatggatcgtttg
gtctgtggagatgtgggctttggtaaaaccgaagttgcgattcgtgccgcttttaaaatg
gtcgataatggtaaacaagtcgcagttttggtacctacaaccattttggcttttcagcat
tacaaaacgtttaccgagcgtttaaaggatatgcccgtgaatgttgcgtatttgaatcga
tttaaaaccgcgaaacagaaagccgaaaccttgaaagaattggctgaaggaaaagtcgat
attttaataggaacgcatcagttggtcaataaaaatgtggtttttaaagatttgggatta
ttagtgattgatgaagaacaaaagttcggagttgccgtaaaagacaaactaaaaaccatt
ggcgaaaatatcgatactttaacgcttaccgcaacgccaatcccgagaacattacagttt
tcgttaatggcagcccgcgatttatcggtaattaccacgccaccaccaaaccgttatcca
atcgaaacaaatgtggtaggttttaacgaagaggttattcgcgatgccattgcgtacgaa
attgaacgaggcggacaggtttatttcattaataacagaatcgaaaatattaaggaagtt
gccggaatgatccagcgtttggttccacatgcaaaagtgggaatcgggcacggacaaatg
gaaggtaagaagttggaagacttgcttttatcgtttatggaaggcgaatttgatgtgttg
gttgctacaacgattattgaaagtggattagatgttcctaacgcaaataccatttttatt
aacaatgccaacaatttcggtttgagtgatttgcatcaaatgcgcggtcgagttggtcga
agcaataaaaaggcgttttgttattttatcacgccaccttacagcgtaatgaccgaagaa
gcacgtaaacgtatttcggcattagaacagttcagcgatttaggcagcggttttaatatt
gccatgaaagatttggaaattcgtggtgcaggtgatattttgggtggcgaacaaagcggt
tttattaatgaaattggttttgaaacgtatcaaaaaatcatgaatgaagccattgatgaa
ctgaaagaaaacgaatttaaagatttatacgaggaagaacaaaatatcgataccaaagaa
tatgtaaaagatattgtaattgagtcagattttgagattttgtttccagatgaatacatc
aacaatgtttctgaacgattaacgttgtataacgaactggcaactttaaaaacggaagat
gaattaatcgcttttcaaaataaattaatcgatcgttttggggcgttgccaagacaagtg
gtgaacctgttagattcggttcgtataaaatggatcgcatcaaaagccggaattgaaaaa
ttggtgctaaaacaaggcaaaatgattggctattttgtaagcgatcaacaatcaatgtat
tatcaatcggcacaattccgaaaagtgttacagtttattcagctgtatccaaaactggca
acgttaaaagaaaaacagaccaaaaacggtttgcgtttactgttgacatttgatcagata
agatcaataaataaagcattggaaaaccttcaaaaactacaacagttatga
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